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Vol. 10, Issue 9, 1359-1368, September 2000
LETTER
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  A. Bettegowda, J. Yao, A. Sen, Q. Li, K.-B. Lee, Y. Kobayashi, O. V. Patel, P. M. Coussens, J. J. Ireland, and G. W. Smith JY-1, an oocyte-specific gene, regulates granulosa cell function and early embryonic development in cattle PNAS, November 6, 2007; 104(45): 17602 - 17607. [Abstract] [Full Text] [PDF]
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 M. Rocchi, N. Archidiacono, and R. Stanyon Ancestral genomes reconstruction: An integrated, multi-disciplinary approach is needed Genome Res., December 1, 2006; 16(12): 1441 - 1444. [Full Text] [PDF]
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 O. Cobanoglu, I. Zaitoun, Y. M. Chang, G. E. Shook, and H. Khatib Effects of the signal transducer and activator of transcription 1 (STAT1) gene on milk production traits in Holstein dairy cattle. J Dairy Sci, November 1, 2006; 89(11): 4433 - 4437. [Abstract] [Full Text] [PDF]
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 M. Gautier, R. R. Barcelona, S. Fritz, C. Grohs, T. Druet, D. Boichard, A. Eggen, and T. H. E. Meuwissen Fine Mapping and Physical Characterization of Two Linked Quantitative Trait Loci Affecting Milk Fat Yield in Dairy Cattle on BTA26 Genetics, January 1, 2006; 172(1): 425 - 436. [Abstract] [Full Text] [PDF]
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A. E.-v. d. Wind, D. M. Larkin, C. A. Green, J. S. Elliott, C. A. Olmstead, R. Chiu, J. E. Schein, M. A. Marra, J. E. Womack, and H. A. Lewin A high-resolution whole-genome cattle-human comparative map reveals details of mammalian chromosome evolution PNAS, December 20, 2005; 102(51): 18526 - 18531. [Abstract] [Full Text] [PDF]
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J. E. Womack Advances in livestock genomics: Opening the barn door Genome Res., December 1, 2005; 15(12): 1699 - 1705. [Abstract] [Full Text] [PDF]
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 G. C. Ferreri, D. M. Liscinsky, J. A. Mack, M. D. B. Eldridge, and R. J. O'Neill Retention of Latent Centromeres in the Mammalian Genome J. Hered., May 1, 2005; 96(3): 217 - 224. [Abstract] [Full Text] [PDF]
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 D. Misceo, M. F. Cardone, L. Carbone, P. D'Addabbo, P. J. de Jong, M. Rocchi, and N. Archidiacono Evolutionary History of Chromosome 20 Mol. Biol. Evol., February 1, 2005; 22(2): 360 - 366. [Abstract] [Full Text] [PDF]
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H. G. Olsen, S. Lien, M. Gautier, H. Nilsen, A. Roseth, P. R. Berg, K. K. Sundsaasen, M. Svendsen, and T. H. E. Meuwissen Mapping of a Milk Production Quantitative Trait Locus to a 420-kb Region on Bovine Chromosome 6 Genetics, January 1, 2005; 169(1): 275 - 283. [Abstract] [Full Text] [PDF]
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 J. Kneeland, C. Li, J. Basarab, W. M. Snelling, B. Benkel, B. Murdoch, C. Hansen, and S. S. Moore Identification and fine mapping of quantitative trait loci for growth traits on bovine chromosomes 2, 6, 14, 19, 21, and 23 within one commercial line of Bos taurus J Anim Sci, December 1, 2004; 82(12): 3405 - 3414. [Abstract] [Full Text] [PDF]
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M. Ventura, S. Weigl, L. Carbone, M. F. Cardone, D. Misceo, M. Teti, P. D'Addabbo, A. Wandall, E. Bjorck, P. J. de Jong, et al. Recurrent Sites for New Centromere Seeding Genome Res., September 1, 2004; 14(9): 1696 - 1703. [Abstract] [Full Text] [PDF]
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A. Everts-van der Wind, S. R. Kata, M. R. Band, M. Rebeiz, D. M. Larkin, R. E. Everts, C. A. Green, L. Liu, S. Natarajan, T. Goldammer, et al. A 1463 Gene Cattle-Human Comparative Map With Anchor Points Defined by Human Genome Sequence Coordinates Genome Res., July 1, 2004; 14(7): 1424 - 1437. [Abstract] [Full Text] [PDF]
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R. Friedman and A. L. Hughes Two Patterns of Genome Organization in Mammals: the Chromosomal Distribution of Duplicate Genes in Human and Mouse Mol. Biol. Evol., June 1, 2004; 21(6): 1008 - 1013. [Abstract] [Full Text] [PDF]
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T. Raudsepp, E.-J. Lee, S. R. Kata, C. Brinkmeyer, J. R. Mickelson, L. C. Skow, J. E. Womack, and B. P. Chowdhary Exceptional conservation of horse-human gene order on X chromosome revealed by high-resolution radiation hybrid mapping PNAS, February 24, 2004; 101(8): 2386 - 2391. [Abstract] [Full Text] [PDF]
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S. A. Sandstedt and P. K. Tucker Evolutionary Strata on the Mouse X Chromosome Correspond to Strata on the Human X Chromosome Genome Res., February 1, 2004; 14(2): 267 - 272. [Abstract] [Full Text] [PDF]
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 T. Goldammer, H. Zerbe, A. Molenaar, H.-J. Schuberth, R. M. Brunner, S. R. Kata, and H.-M. Seyfert Mastitis Increases Mammary mRNA Abundance of {beta}-Defensin 5, Toll-Like-Receptor 2 (TLR2), and TLR4 but Not TLR9 in Cattle Clin. Vaccine Immunol., January 1, 2004; 11(1): 174 - 185. [Abstract] [Full Text] [PDF]
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R. Durrett, R. Nielsen, and T. L. York Bayesian Estimation of Genomic Distance Genetics, January 1, 2004; 166(1): 621 - 629. [Abstract] [Full Text] [PDF]
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 S. P. Suchyta, S. Sipkovsky, R. G. Halgren, R. Kruska, M. Elftman, M. Weber-Nielsen, M. J. Vandehaar, L. Xiao, R. J. Tempelman, and P. M. Coussens Bovine mammary gene expression profiling using a cDNA microarray enhanced for mammary-specific transcripts Physiol Genomics, December 16, 2003; 16(1): 8 - 18. [Abstract] [Full Text] [PDF]
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M. Ventura, J. M. Mudge, V. Palumbo, S. Burn, E. Blennow, M. Pierluigi, R. Giorda, O. Zuffardi, N. Archidiacono, M. S. Jackson, et al. Neocentromeres in 15q24-26 Map to Duplicons Which Flanked an Ancestral Centromere in 15q25 Genome Res., September 1, 2003; 13(9): 2059 - 2068. [Abstract] [Full Text] [PDF]
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V. Eder, M. Ventura, M. Ianigro, M. Teti, M. Rocchi, and N. Archidiacono Chromosome 6 Phylogeny in Primates and Centromere Repositioning Mol. Biol. Evol., September 1, 2003; 20(9): 1506 - 1512. [Abstract] [Full Text] [PDF]
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M. E. Sorrells, M. La Rota, C. E. Bermudez-Kandianis, R. A. Greene, R. Kantety, J. D. Munkvold, Miftahudin, A. Mahmoud, X. Ma, P. J. Gustafson, et al. Comparative DNA Sequence Analysis of Wheat and Rice Genomes Genome Res., August 1, 2003; 13(8): 1818 - 1827. [Abstract] [Full Text] [PDF]
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D. M. Larkin, A. Everts-van der Wind, M. Rebeiz, P. A. Schweitzer, S. Bachman, C. Green, C. L. Wright, E. J. Campos, L. D. Benson, J. Edwards, et al. A Cattle-Human Comparative Map Built with Cattle BAC-Ends and Human Genome Sequence Genome Res., August 1, 2003; 13(8): 1966 - 1972. [Abstract] [Full Text] [PDF]
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W. J. Murphy, L. Fronicke, S. J. O'Brien, and R. Stanyon The Origin of Human Chromosome 1 and Its Homologs in Placental Mammals Genome Res., August 1, 2003; 13(8): 1880 - 1888. [Abstract] [Full Text] [PDF]
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M. Iwase, Y. Satta, Y. Hirai, H. Hirai, H. Imai, and N. Takahata From the Cover: The amelogenin loci span an ancient pseudoautosomal boundary in diverse mammalian species PNAS, April 29, 2003; 100(9): 5258 - 5263. [Abstract] [Full Text] [PDF]
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B. P. Chowdhary, T. Raudsepp, S. R. Kata, G. Goh, L. V. Millon, V. Allan, F. Piumi, G. Guerin, J. Swinburne, M. Binns, et al. The First-Generation Whole-Genome Radiation Hybrid Map in the Horse Identifies Conserved Segments in Human and Mouse Genomes Genome Res., April 1, 2003; 13(4): 742 - 751. [Abstract] [Full Text] [PDF]
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M. Menotti-Raymond, V. A. David, Z. Q. Chen, K. A. Menotti, S. Sun, A. A. Schaffer, R. Agarwala, J. F. Tomlin, S. J. O'Brien, and W. J. Murphy Second-Generation Integrated Genetic Linkage/Radiation Hybrid Maps of the Domestic Cat (Felis catus) J. Hered., January 1, 2003; 94(1): 95 - 106. [Abstract] [Full Text] [PDF]
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J. Slate, P. M. Visscher, S. MacGregor, D. Stevens, M. L. Tate, and J. M. Pemberton A Genome Scan for Quantitative Trait Loci in a Wild Population of Red Deer (Cervus elaphus) Genetics, December 1, 2002; 162(4): 1863 - 1873. [Abstract] [Full Text] [PDF]
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L. Gomez-Raya, H. G. Olsen, F. Lingaas, H. Klungland, D. I. Vage, I. Olsaker, S. B. Talle, M. Aasland, and S. Lien The Use of Genetic Markers to Measure Genomic Response to Selection in Livestock Genetics, November 1, 2002; 162(3): 1381 - 1388. [Abstract] [Full Text] [PDF]
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 I. Hotzel and W. P. Cheevers A maedi-visna virus strain K1514 receptor gene is located in sheep chromosome 3p and the syntenic region of human chromosome 2 J. Gen. Virol., June 1, 2002; 83(7): 1759 - 1764. [Abstract] [Full Text] [PDF]
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J. Slate, T. C. Van Stijn, R. M. Anderson, K. M. McEwan, N. J. Maqbool, H. C. Mathias, M. J. Bixley, D. R. Stevens, A. J. Molenaar, J. E. Beever, et al. A Deer (Subfamily Cervinae) Genetic Linkage Map and the Evolution of Ruminant Genomes Genetics, April 1, 2002; 160(4): 1587 - 1597. [Abstract] [Full Text] [PDF]
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T. Goldammer, S. R. Kata, R. M. Brunner, U. Dorroch, H. Sanftleben, M. Schwerin, and J. E. Womack A comparative radiation hybrid map of bovine chromosome 18 and homologous chromosomes in human and mice PNAS, February 19, 2002; 99(4): 2106 - 2111. [Abstract] [Full Text] [PDF]
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 A. Takasuga, S. Hirotsune, R. Itoh, A. Jitohzono, H. Suzuki, H. Aso, and Y. Sugimoto Establishment of a high throughput EST sequencing system using poly(A) tail-removed cDNA libraries and determination of 36 000 bovine ESTs Nucleic Acids Res., November 15, 2001; 29(22): e108 - e108. [Abstract] [Full Text] [PDF]
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W. J. Murphy, J. E. Page, C. Smith Jr., R. C. Desrosiers, and S. J. O'Brien A Radiation Hybrid Mapping Panel for the Rhesus Macaque J. Hered., November 1, 2001; 92(6): 516 - 519. [Abstract] [Full Text] [PDF]
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M. Ron, D. Kliger, E. Feldmesser, E. Seroussi, E. Ezra, and J. I. Weller Multiple Quantitative Trait Locus Analysis of Bovine Chromosome 6 in the Israeli Holstein Population by a Daughter Design Genetics, October 1, 2001; 159(2): 727 - 735. [Abstract] [Full Text] [PDF]
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 P. Dehal, P. Predki, A. S. Olsen, A. Kobayashi, P. Folta, S. Lucas, M. Land, A. Terry, C. L. Ecale Zhou, S. Rash, et al. Human Chromosome 19 and Related Regions in Mouse: Conservative and Lineage-Specific Evolution Science, July 6, 2001; 293(5527): 104 - 111. [Abstract] [Full Text] [PDF]
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M. Ventura, N. Archidiacono, and M. Rocchi Centromere Emergence in Evolution Genome Res., April 1, 2001; 11(4): 595 - 599. [Abstract] [Full Text]
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C. Drogemuller, O. Distl, and T. Leeb Partial Deletion of the Bovine ED1 Gene Causes Anhidrotic Ectodermal Dysplasia in Cattle Genome Res., October 1, 2001; 11(10): 1699 - 1705. [Abstract] [Full Text] [PDF]
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105
conserved segments between the two genomes. The comparative map
suggests that 41 translocation events, a minimum of 54 internal
rearrangements, and repositioning of all but one centromere can account
for the observed organizations of the cattle and human genomes. In
addition, the COMPASS in silico mapping tool was shown to be 95%
accurate in its ability to predict cattle chromosome location from
random sequence data, demonstrating this tool to be valuable for
efficient targeting of specific regions for detailed mapping. The
comparative map generated will be a cornerstone for elucidating
mammalian chromosome phylogeny and the identification of genes of
agricultural importance."Ought we, for instance, to begin by
discussing each separate species
in virtue of some common element of
their nature, and proceed from this as a basis for the consideration of
them separately?" from Aristotle, On the Parts of Animals,
350 B.C.E.