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Vol. 10, Issue 7, 967-981, July 2000
LETTER
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  M. Brandstrom and H. Ellegren Genome-wide analysis of microsatellite polymorphism in chicken circumventing the ascertainment bias Genome Res., June 1, 2008; 18(6): 881 - 887. [Abstract] [Full Text] [PDF]
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 M. GuhaMajumdar, E. Dawson-Baglien, and B. B. Sears Creation of a Chloroplast Microsatellite Reporter for Detection of Replication Slippage in Chlamydomonas reinhardtii Eukaryot. Cell, April 1, 2008; 7(4): 639 - 646. [Abstract] [Full Text] [PDF]
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 S. E. Hile and K. A. Eckert DNA polymerase kappa produces interrupted mutations and displays polar pausing within mononucleotide microsatellite sequences Nucleic Acids Res., February 2, 2008; 36(2): 688 - 696. [Abstract] [Full Text] [PDF]
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 Y.-J. Han and P. de Lanerolle Naturally Extended CT {middle dot} AG Repeats Increase H-DNA Structures and Promoter Activity in the Smooth Muscle Myosin Light Chain Kinase Gene Mol. Cell. Biol., January 15, 2008; 28(2): 863 - 872. [Abstract] [Full Text] [PDF]
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 J. Mrazek, X. Guo, and A. Shah Simple sequence repeats in prokaryotic genomes PNAS, May 15, 2007; 104(20): 8472 - 8477. [Abstract] [Full Text] [PDF]
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 S. B. Mudunuri and H. A. Nagarajaram IMEx: Imperfect Microsatellite Extractor Bioinformatics, May 15, 2007; 23(10): 1181 - 1187. [Abstract] [Full Text] [PDF]
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 P. W. Messer and P. F. Arndt The Majority of Recent Short DNA Insertions in the Human Genome Are Tandem Duplications Mol. Biol. Evol., May 1, 2007; 24(5): 1190 - 1197. [Abstract] [Full Text] [PDF]
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 A.-M. Patch and S. J. Aves Fingerprinting fission yeast: polymorphic markers for molecular genetic analysis of Schizosaccharomyces pombe strains Microbiology, March 1, 2007; 153(3): 887 - 897. [Abstract] [Full Text] [PDF]
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A. M. Shedlock, C. W. Botka, S. Zhao, J. Shetty, T. Zhang, J. S. Liu, P. J. Deschavanne, and S. V. Edwards Phylogenomics of nonavian reptiles and the structure of the ancestral amniote genome PNAS, February 20, 2007; 104(8): 2767 - 2772. [Abstract] [Full Text] [PDF]
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 P. Singh, L. Zheng, V. Chavez, J. Qiu, and B. Shen Concerted Action of Exonuclease and Gap-dependent Endonuclease Activities of FEN-1 Contributes to the Resolution of Triplet Repeat Sequences (CTG)n- and (GAA)n-derived Secondary Structures Formed during Maturation of Okazaki Fragments J. Biol. Chem., February 9, 2007; 282(6): 3465 - 3477. [Abstract] [Full Text] [PDF]
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S. Archak, E. Meduri, P. S. Kumar, and J. Nagaraju InSatDb: a microsatellite database of fully sequenced insect genomes Nucleic Acids Res., January 12, 2007; 35(suppl_1): D36 - D39. [Abstract] [Full Text] [PDF]
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M. Aarts, M. Dekker, S. de Vries, A. van der Wal, and H. te Riele Generation of a mouse mutant by oligonucleotide-mediated gene modification in ES cells Nucleic Acids Res., December 4, 2006; 34(21): e147 - e147. [Abstract] [Full Text] [PDF]
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 A. Zhan, J. Hu, X. Wang, W. Lu, M. Hui, and Z. Bao A panel of polymorphic EST-derived microsatellite loci for the bay scallop (Argopecten irradians) J. Mollus. Stud., November 1, 2006; 72(4): 435 - 438. [Full Text]
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 C. H. Pashley, J. R. Ellis, D. E. McCauley, and J. M. Burke EST Databases as a Source for Molecular Markers: Lessons from Helianthus J. Hered., July 1, 2006; 97(4): 381 - 388. [Abstract] [Full Text] [PDF]
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E. Jewell, A. Robinson, D. Savage, T. Erwin, C. G. Love, G. A. C. Lim, X. Li, J. Batley, G. C. Spangenberg, and D. Edwards SSRPrimer and SSR Taxonomy Tree: Biome SSR discovery. Nucleic Acids Res., July 1, 2006; 34(Web Server issue): W656 - W659. [Abstract] [Full Text] [PDF]
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 J.-H. Mun, D.-J. Kim, H.-K. Choi, J. Gish, F. Debelle, J. Mudge, R. Denny, G. Endre, O. Saurat, A.-M. Dudez, et al. Distribution of Microsatellites in the Genome of Medicago truncatula: A Resource of Genetic Markers That Integrate Genetic and Physical Maps Genetics, April 1, 2006; 172(4): 2541 - 2555. [Abstract] [Full Text] [PDF]
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 S. Ochsenreither, K. Kuhls, M. Schaar, W. Presber, and G. Schonian Multilocus Microsatellite Typing as a New Tool for Discrimination of Leishmania infantum MON-1 Strains J. Clin. Microbiol., February 1, 2006; 44(2): 495 - 503. [Abstract] [Full Text] [PDF]
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 A. Shelenkov, K. Skryabin, and E. Korotkov Search and Classification of Potential Minisatellite Sequences from Bacterial Genomes DNA Res, January 1, 2006; 13(3): 89 - 102. [Abstract] [Full Text] [PDF]
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G.-F. Richard and B. Dujon Molecular Evolution of Minisatellites in Hemiascomycetous Yeasts Mol. Biol. Evol., January 1, 2006; 23(1): 189 - 202. [Abstract] [Full Text] [PDF]
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J. E. Galagan, M. R. Henn, L.-J. Ma, C. A. Cuomo, and B. Birren Genomics of the fungal kingdom: Insights into eukaryotic biology Genome Res., December 1, 2005; 15(12): 1620 - 1631. [Abstract] [Full Text] [PDF]
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A. Decottignies Capture of Extranuclear DNA at Fission Yeast Double-Strand Breaks Genetics, December 1, 2005; 171(4): 1535 - 1548. [Abstract] [Full Text] [PDF]
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D. A. Chistiakov, B. Hellemans, C. S. Haley, A. S. Law, C. S. Tsigenopoulos, G. Kotoulas, D. Bertotto, A. Libertini, and F. A. M. Volckaert A Microsatellite Linkage Map of the European Sea Bass Dicentrarchus labrax L. Genetics, August 1, 2005; 170(4): 1821 - 1826. [Abstract] [Full Text] [PDF]
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K. M. Ottewell, S. C. Donnellan, G. F. Moran, and D. C. Paton Multiplexed Microsatellite Markers for the Genetic Analysis of Eucalyptus leucoxylon (Myrtaceae) and Their Utility for Ecological and Breeding Studies in other Eucalyptus Species J. Hered., July 1, 2005; 96(4): 445 - 451. [Abstract] [Full Text] [PDF]
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T. Boby, A.-M. Patch, and S. J. Aves TRbase: a database relating tandem repeats to disease genes for the human genome Bioinformatics, March 15, 2005; 21(6): 811 - 816. [Abstract] [Full Text] [PDF]
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M. Perez, F. Cruz, and P. Presa Distribution Properties of Polymononucleotide Repeats in Molluscan Genomes J. Hered., January 1, 2005; 96(1): 40 - 51. [Abstract] [Full Text] [PDF]
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M. D. Prasad, M. Muthulakshmi, K. P. Arunkumar, M. Madhu, V. B. Sreenu, V. Pavithra, B. Bose, H. A. Nagarajaram, K. Mita, T. Shimada, et al. SilkSatDb: a microsatellite database of the silkworm, Bombyx mori Nucleic Acids Res., January 1, 2005; 33(suppl_1): D403 - D406. [Abstract] [Full Text] [PDF]
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M. D. Prasad, M. Muthulakshmi, M. Madhu, S. Archak, K. Mita, and J. Nagaraju Survey and Analysis of Microsatellites in the Silkworm, Bombyx mori: Frequency, Distribution, Mutations, Marker Potential and Their Conservation in Heterologous Species Genetics, January 1, 2005; 169(1): 197 - 214. [Abstract] [Full Text] [PDF]
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E. Nascimento, R. Martinez, A. Rodrigues Lopes, L. A. de Souza Bernardes, C. Pomponio Barco, M. H. S. Goldman, J. W. Taylor, J. G. McEwen, M. Pasetto Nobrega, F. G. Nobrega, et al. Detection and Selection of Microsatellites in the Genome of Paracoccidioides brasiliensis as Molecular Markers for Clinical and Epidemiological Studies J. Clin. Microbiol., November 1, 2004; 42(11): 5007 - 5014. [Abstract] [Full Text] [PDF]
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A.-M. Mallon, L. Wilming, J. Weekes, J. G.R. Gilbert, J. Ashurst, S. Peyrefitte, L. Matthews, M. Cadman, R. McKeone, C. A. Sellick, et al. Organization and Evolution of a Gene-Rich Region of the Mouse Genome: A 12.7-Mb Region Deleted in the Del(13)Svea36H Mouse Genome Res., October 1, 2004; 14(10a): 1888 - 1901. [Abstract] [Full Text] [PDF]
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Y.-C. Li, A. B. Korol, T. Fahima, and E. Nevo Microsatellites Within Genes: Structure, Function, and Evolution Mol. Biol. Evol., June 1, 2004; 21(6): 991 - 1007. [Abstract] [Full Text] [PDF]
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M. M. Alba and R. Guigo Comparative Analysis of Amino Acid Repeats in Rodents and Humans Genome Res., April 1, 2004; 14(4): 549 - 554. [Abstract] [Full Text] [PDF]
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T. W. Hefferon, J. D. Groman, C. E. Yurk, and G. R. Cutting A variable dinucleotide repeat in the CFTR gene contributes to phenotype diversity by forming RNA secondary structures that alter splicing PNAS, March 9, 2004; 101(10): 3504 - 3509. [Abstract] [Full Text] [PDF]
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B. L. Heidenfelder and M. D. Topal Effects of sequence on repeat expansion during DNA replication Nucleic Acids Res., December 15, 2003; 31(24): 7159 - 7164. [Abstract] [Full Text] [PDF]
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K. Sobczak, M. de Mezer, G. Michlewski, J. Krol, and W. J. Krzyzosiak RNA structure of trinucleotide repeats associated with human neurological diseases Nucleic Acids Res., October 1, 2003; 31(19): 5469 - 5482. [Abstract] [Full Text] [PDF]
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D. Dieringer and C. Schlotterer Two Distinct Modes of Microsatellite Mutation Processes: Evidence From the Complete Genomic Sequences of Nine Species Genome Res., October 1, 2003; 13(10): 2242 - 2251. [Abstract] [Full Text] [PDF]
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Z. Zhang and M. Gerstein Patterns of nucleotide substitution, insertion and deletion in the human genome inferred from pseudogenes Nucleic Acids Res., September 15, 2003; 31(18): 5338 - 5348. [Abstract] [Full Text] [PDF]
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 B. Wickstead, K. Ersfeld, and K. Gull Repetitive Elements in Genomes of Parasitic Protozoa Microbiol. Mol. Biol. Rev., September 1, 2003; 67(3): 360 - 375. [Abstract] [Full Text] [PDF]
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C. L. Ross, K. A. Dyer, T. Erez, S. J. Miller, J. Jaenike, and T. A. Markow Rapid Divergence of Microsatellite Abundance Among Species of Drosophila Mol. Biol. Evol., July 1, 2003; 20(7): 1143 - 1157. [Abstract] [Full Text] [PDF]
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P. Sampaio, L. Gusmao, C. Alves, C. Pina-Vaz, A. Amorim, and C. Pais Highly Polymorphic Microsatellite for Identification of Candida albicans Strains J. Clin. Microbiol., February 1, 2003; 41(2): 552 - 557. [Abstract] [Full Text] [PDF]
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B. L. Heidenfelder, A. M. Makhov, and M. D. Topal Hairpin Formation in Friedreich's Ataxia Triplet Repeat Expansion J. Biol. Chem., January 17, 2003; 278(4): 2425 - 2431. [Abstract] [Full Text] [PDF]
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A. A. Vetcher, M. Napierala, and R. D. Wells Sticky DNA: Effect of the Polypurine{middle dot}Polypyrimidine Sequence J. Biol. Chem., October 11, 2002; 277(42): 39228 - 39234. [Abstract] [Full Text] [PDF]
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B. Borstnik and D. Pumpernik Tandem Repeats in Protein Coding Regions of Primate Genes Genome Res., June 1, 2002; 12(6): 909 - 915. [Abstract] [Full Text] [PDF]
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 J. T. Streelman and T. D. Kocher Microsatellite variation associated with prolactin expression and growth of salt-challenged tilapia Physiol Genomics, April 10, 2002; 9(1): 1 - 4. [Abstract] [Full Text] [PDF]
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 J. C. Boyer, N. A. Yamada, C. N. Roques, S. B. Hatch, K. Riess, and R. A. Farber Sequence dependent instability of mononucleotide microsatellites in cultured mismatch repair proficient and deficient mammalian cells Hum. Mol. Genet., March 1, 2002; 11(6): 707 - 713. [Abstract] [Full Text] [PDF]
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A. L. Bacon, M. G. Dunlop, and S. M. Farrington Hypermutability at a poly(A/T) tract in the human germline Nucleic Acids Res., November 1, 2001; 29(21): 4405 - 4413. [Abstract] [Full Text] [PDF]
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M. V. Katti, P. K. Ranjekar, and V. S. Gupta Differential Distribution of Simple Sequence Repeats in Eukaryotic Genome Sequences Mol. Biol. Evol., July 1, 2001; 18(7): 1161 - 1167. [Abstract] [Full Text] [PDF]
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C. Rizzon, G. Marais, M. Gouy, and C. Biemont Recombination Rate and the Distribution of Transposable Elements in the Drosophila melanogaster Genome Genome Res., March 1, 2002; 12(3): 400 - 407. [Abstract] [Full Text] [PDF]
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J. T. Streelman and T. D. Kocher Microsatellite variation associated with prolactin expression and growth of salt-challenged tilapia Physiol Genomics, April 10, 2002; 9(1): 1 - 4. [Abstract] [Full Text] [PDF]
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(CGG)n trinucleotide repeats in
intergenic regions of all vertebrates, in contrast to the almost complete lack of this motif from introns. Taxon-specific variation could also be detected in the frequency distributions of simple sequence motifs. Our results suggest that strand-slippage theories alone are insufficient to explain microsatellite distribution in the
genome as a whole. Other possible factors contributing to the observed
divergence are discussed.