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Vol. 10, Issue 7, 908-915, July 2000
REPORTS
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  R. Kalendar, J. Tanskanen, W. Chang, K. Antonius, H. Sela, O. Peleg, and A. H. Schulman Cassandra retrotransposons carry independently transcribed 5S RNA PNAS, April 15, 2008; 105(15): 5833 - 5838. [Abstract] [Full Text] [PDF]
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 M. Tomita, K. Shinohara, and M. Morimoto Revolver is a New Class of Transposon-like Gene Composing the Triticeae Genome DNA Res, February 1, 2008; 15(1): 49 - 62. [Abstract] [Full Text] [PDF]
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 J. D. Hollister and B. S. Gaut Population and Evolutionary Dynamics of Helitron Transposable Elements in Arabidopsis thaliana Mol. Biol. Evol., November 1, 2007; 24(11): 2515 - 2524. [Abstract] [Full Text] [PDF]
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 H. Ner-Gaon, N. Leviatan, E. Rubin, and R. Fluhr Comparative Cross-Species Alternative Splicing in Plants Plant Physiology, July 1, 2007; 144(3): 1632 - 1641. [Abstract] [Full Text] [PDF]
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Q. Wang and H. K. Dooner Eukaryotic Transposable Elements and Genome Evolution Special Feature: Remarkable variation in maize genome structure inferred from haplotype diversity at the bz locus PNAS, November 21, 2006; 103(47): 17644 - 17649. [Abstract] [Full Text] [PDF]
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 J. S. Hawkins, H. Kim, J. D. Nason, R. A. Wing, and J. F. Wendel Differential lineage-specific amplification of transposable elements is responsible for genome size variation in Gossypium Genome Res., October 1, 2006; 16(10): 1252 - 1261. [Abstract] [Full Text] [PDF]
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B. Piegu, R. Guyot, N. Picault, A. Roulin, A. Saniyal, H. Kim, K. Collura, D. S. Brar, S. Jackson, R. A. Wing, et al. Doubling genome size without polyploidization: Dynamics of retrotransposition-driven genomic expansions in Oryza australiensis, a wild relative of rice Genome Res., October 1, 2006; 16(10): 1262 - 1269. [Abstract] [Full Text] [PDF]
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T. H. Oakley, B. Ostman, and A. C. V. Wilson Repression and loss of gene expression outpaces activation and gain in recently duplicated fly genes PNAS, August 1, 2006; 103(31): 11637 - 11641. [Abstract] [Full Text] [PDF]
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 P. Neumann, A. Koblizkova, A. Navratilova, and J. Macas Significant Expansion of Vicia pannonica Genome Size Mediated by Amplification of a Single Type of Giant Retroelement Genetics, June 1, 2006; 173(2): 1047 - 1056. [Abstract] [Full Text] [PDF]
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M. Boulesteix, M. Weiss, and C. Biemont Differences in Genome Size Between Closely Related Species: The Drosophila melanogaster Species Subgroup Mol. Biol. Evol., January 1, 2006; 23(1): 162 - 167. [Abstract] [Full Text] [PDF]
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J.-S. Kim, M. N. Islam-Faridi, P. E. Klein, D. M. Stelly, H. J. Price, R. R. Klein, and J. E. Mullet Comprehensive Molecular Cytogenetic Analysis of Sorghum Genome Architecture: Distribution of Euchromatin, Heterochromatin, Genes and Recombination in Comparison to Rice Genetics, December 1, 2005; 171(4): 1963 - 1976. [Abstract] [Full Text] [PDF]
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A. Bouck, R. Peeler, M. L. Arnold, and S. R. Wessler Genetic Mapping of Species Boundaries in Louisiana Irises Using IRRE Retrotransposon Display Markers Genetics, November 1, 2005; 171(3): 1289 - 1303. [Abstract] [Full Text] [PDF]
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R. Jing, M. R. Knox, J. M. Lee, A. V. Vershinin, M. Ambrose, T. H. N. Ellis, and A. J. Flavell Insertional Polymorphism and Antiquity of PDR1 Retrotransposon Insertions in Pisum Species Genetics, October 1, 2005; 171(2): 741 - 752. [Abstract] [Full Text] [PDF]
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 G. Caetano-Anolles Evolution of Genome Size in the Grasses Crop Sci., August 1, 2005; 45(5): 1809 - 1816. [Abstract] [Full Text] [PDF]
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 M. Matsuo, Y. Ito, R. Yamauchi, and J. Obokata The Rice Nuclear Genome Continuously Integrates, Shuffles, and Eliminates the Chloroplast Genome to Cause Chloroplast-Nuclear DNA Flux PLANT CELL, March 1, 2005; 17(3): 665 - 675. [Abstract] [Full Text] [PDF]
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S. Brunner, K. Fengler, M. Morgante, S. Tingey, and A. Rafalski Evolution of DNA Sequence Nonhomologies among Maize Inbreds PLANT CELL, February 1, 2005; 17(2): 343 - 360. [Abstract] [Full Text] [PDF]
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 J. L. BENNETZEN, J. MA, and K. M. DEVOS Mechanisms of Recent Genome Size Variation in Flowering Plants Ann. Bot., January 1, 2005; 95(1): 127 - 132. [Abstract] [Full Text] [PDF]
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I. J. LEITCH, D. E. SOLTIS, P. S. SOLTIS, and M. D. BENNETT Evolution of DNA Amounts Across Land Plants (Embryophyta) Ann. Bot., January 1, 2005; 95(1): 207 - 217. [Abstract] [Full Text] [PDF]
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 H. Puchta The repair of double-strand breaks in plants: mechanisms and consequences for genome evolution J. Exp. Bot., January 1, 2005; 56(409): 1 - 14. [Abstract] [Full Text] [PDF]
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T. Wicker, J. S. Robertson, S. R. Schulze, F. A. Feltus, V. Magrini, J. A. Morrison, E. R. Mardis, R. K. Wilson, D. G. Peterson, A. H. Paterson, et al. The repetitive landscape of the chicken genome Genome Res., January 1, 2005; 15(1): 126 - 136. [Abstract] [Full Text] [PDF]
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K. S. Caldwell, P. Langridge, and W. Powell Comparative Sequence Analysis of the Region Harboring the Hardness Locus in Barley and Its Colinear Region in Rice Plant Physiology, October 1, 2004; 136(2): 3177 - 3190. [Abstract] [Full Text] [PDF]
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J. Ma and J. L. Bennetzen Inaugural Article: Rapid recent growth and divergence of rice nuclear genomes PNAS, August 24, 2004; 101(34): 12404 - 12410. [Abstract] [Full Text] [PDF]
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C. E. Grover, H. Kim, R. A. Wing, A. H. Paterson, and J. F. Wendel Incongruent Patterns of Local and Global Genome Size Evolution in Cotton Genome Res., August 1, 2004; 14(8): 1474 - 1482. [Abstract] [Full Text] [PDF]
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 M. Erayman, D. Sandhu, D. Sidhu, M. Dilbirligi, P. S. Baenziger, and K. S. Gill Demarcating the gene-rich regions of the wheat genome Nucleic Acids Res., July 7, 2004; 32(12): 3546 - 3565. [Abstract] [Full Text] [PDF]
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J. Ma, K. M. Devos, and J. L. Bennetzen Analyses of LTR-Retrotransposon Structures Reveal Recent and Rapid Genomic DNA Loss in Rice Genome Res., May 1, 2004; 14(5): 860 - 869. [Abstract] [Full Text] [PDF]
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S. S. Jakob, A. Meister, and F. R. Blattner The Considerable Genome Size Variation of Hordeum Species (Poaceae) Is Linked to Phylogeny, Life Form, Ecology, and Speciation Rates Mol. Biol. Evol., May 1, 2004; 21(5): 860 - 869. [Abstract] [Full Text] [PDF]
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Y. Q. Gu, D. Coleman-Derr, X. Kong, and O. D. Anderson Rapid Genome Evolution Revealed by Comparative Sequence Analysis of Orthologous Regions from Four Triticeae Genomes Plant Physiology, May 1, 2004; 135(1): 459 - 470. [Abstract] [Full Text] [PDF]
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J. Wu, H. Yamagata, M. Hayashi-Tsugane, S. Hijishita, M. Fujisawa, M. Shibata, Y. Ito, M. Nakamura, M. Sakaguchi, R. Yoshihara, et al. Composition and Structure of the Centromeric Region of Rice Chromosome 8 PLANT CELL, April 1, 2004; 16(4): 967 - 976. [Abstract] [Full Text] [PDF]
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R. Kalendar, C. M. Vicient, O. Peleg, K. Anamthawat-Jonsson, A. Bolshoy, and A. H. Schulman Large Retrotransposon Derivatives: Abundant, Conserved but Nonautonomous Retroelements of Barley and Related Genomes Genetics, March 1, 2004; 166(3): 1437 - 1450. [Abstract] [Full Text] [PDF]
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J. S. Rest and D. P. Mindell Retroids in Archaea: Phylogeny and Lateral Origins Mol. Biol. Evol., July 1, 2003; 20(7): 1134 - 1142. [Abstract] [Full Text] [PDF]
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S. Brunner, B. Keller, and C. Feuillet A Large Rearrangement Involving Genes and Low-Copy DNA Interrupts the Microcollinearity Between Rice and Barley at the Rph7 Locus Genetics, June 1, 2003; 164(2): 673 - 683. [Abstract] [Full Text] [PDF]
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T. Wicker, R. Guyot, N. Yahiaoui, and B. Keller CACTA Transposons in Triticeae. A Diverse Family of High-Copy Repetitive Elements Plant Physiology, May 1, 2003; 132(1): 52 - 63. [Abstract] [Full Text] [PDF]
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T. Wicker, N. Yahiaoui, R. Guyot, E. Schlagenhauf, Z.-D. Liu, J. Dubcovsky, and B. Keller Rapid Genome Divergence at Orthologous Low Molecular Weight Glutenin Loci of the A and Am Genomes of Wheat PLANT CELL, May 1, 2003; 15(5): 1186 - 1197. [Abstract] [Full Text]
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C. Vitte and O. Panaud Formation of Solo-LTRs Through Unequal Homologous Recombination Counterbalances Amplifications of LTR Retrotransposons in Rice Oryza sativa L. Mol. Biol. Evol., April 1, 2003; 20(4): 528 - 540. [Abstract] [Full Text] [PDF]
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L. HANSON, R. L. BROWN, A. BOYD, M. A. T. JOHNSON, and M. D. BENNETT First Nuclear DNA C-values for 28 Angiosperm Genera Ann. Bot., January 1, 2003; 91(1): 31 - 38. [Abstract] [Full Text] [PDF]
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W. Ramakrishna, J. Dubcovsky, Y.-J. Park, C. Busso, J. Emberton, P. SanMiguel, and J. L. Bennetzen Different Types and Rates of Genome Evolution Detected by Comparative Sequence Analysis of Orthologous Segments From Four Cereal Genomes Genetics, November 1, 2002; 162(3): 1389 - 1400. [Abstract] [Full Text] [PDF]
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M. Stam, C. Belele, W. Ramakrishna, J. E. Dorweiler, J. L. Bennetzen, and V. L. Chandler The Regulatory Regions Required for B' Paramutation and Expression Are Located Far Upstream of the Maize b1 Transcribed Sequences Genetics, October 1, 2002; 162(2): 917 - 930. [Abstract] [Full Text] [PDF]
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A. Baumel, M. Ainouche, R. Kalendar, and A. H. Schulman Retrotransposons and Genomic Stability in Populations of the Young Allopolyploid Species Spartina anglica C.E. Hubbard (Poaceae) Mol. Biol. Evol., August 1, 2002; 19(8): 1218 - 1227. [Abstract] [Full Text] [PDF]
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F. Wei, R. A. Wing, and R. P. Wise Genome Dynamics and Evolution of the Mla (Powdery Mildew) Resistance Locus in Barley PLANT CELL, August 1, 2002; 14(8): 1903 - 1917. [Abstract] [Full Text] [PDF]
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H. Fu and H. K. Dooner From the Cover: Intraspecific violation of genetic colinearity and its implications in maize PNAS, July 9, 2002; 99(14): 9573 - 9578. [Abstract] [Full Text] [PDF]
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K. M. Devos, J. K.M. Brown, and J. L. Bennetzen Genome Size Reduction through Illegitimate Recombination Counteracts Genome Expansion in Arabidopsis Genome Res., July 1, 2002; 12(7): 1075 - 1079. [Abstract] [Full Text] [PDF]
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N. Jiang, Z. Bao, S. Temnykh, Z. Cheng, J. Jiang, R. A. Wing, S. R. McCouch, and S. R. Wessler Dasheng: A Recently Amplified Nonautonomous Long Terminal Repeat Element That Is a Major Component of Pericentromeric Regions in Rice Genetics, July 1, 2002; 161(3): 1293 - 1305. [Abstract] [Full Text] [PDF]
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R. Siebert and H. Puchta Efficient Repair of Genomic Double-Strand Breaks by Homologous Recombination between Directly Repeated Sequences in the Plant Genome PLANT CELL, May 1, 2002; 14(5): 1121 - 1131. [Abstract] [Full Text] [PDF]
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W. Li and B. S. Gill The Colinearity of the Sh2/A1 Orthologous Region in Rice, Sorghum and Maize Is Interrupted and Accompanied by Genome Expansion in the Triticeae Genetics, March 1, 2002; 160(3): 1153 - 1162. [Abstract] [Full Text] [PDF]
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D. Sandhu and K. S. Gill Gene-Containing Regions of Wheat and the Other Grass Genomes Plant Physiology, March 1, 2002; 128(3): 803 - 811. [Abstract] [Full Text] [PDF]
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C. FEUILLET and B. KELLER Comparative Genomics in the Grass Family: Molecular Characterization of Grass Genome Structure and Evolution Ann. Bot., January 1, 2002; 89(1): 3 - 10. [Abstract] [Full Text] [PDF]
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C. M. Vicient, R. Kalendar, and A. H. Schulman Envelope-Class Retrovirus-Like Elements Are Widespread, Transcribed and Spliced, and Insertionally Polymorphic in Plants Genome Res., December 1, 2001; 11(12): 2041 - 2049. [Abstract] [Full Text] [PDF]
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C.-P. Witte, Q. H. Le, T. Bureau, and A. Kumar Terminal-repeat retrotransposons in miniature (TRIM) are involved in restructuring plant genomes PNAS, November 20, 2001; 98(24): 13778 - 13783. [Abstract] [Full Text] [PDF]
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H. Fu, W. Park, X. Yan, Z. Zheng, B. Shen, and H. K. Dooner The highly recombinogenic bz locus lies in an unusually gene-rich region of the maize genome PNAS, June 28, 2001; (2001) 141221898. [Abstract] [Full Text] [PDF]
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C. M. Vicient, M. J. Jääskeläinen, R. Kalendar, and A. H. Schulman Active Retrotransposons Are a Common Feature of Grass Genomes Plant Physiology, March 1, 2001; 125(3): 1283 - 1292. [Abstract] [Full Text]
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J. Dubcovsky, W. Ramakrishna, P. J. SanMiguel, C. S. Busso, L. Yan, B. A. Shiloff, and J. L. Bennetzen Comparative Sequence Analysis of Colinear Barley and Rice Bacterial Artificial Chromosomes Plant Physiology, March 1, 2001; 125(3): 1342 - 1353. [Abstract] [Full Text]
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A. M. Casa, C. Brouwer, A. Nagel, L. Wang, Q. Zhang, S. Kresovich, and S. R. Wessler Inaugural Article: The MITE family Heartbreaker (Hbr): Molecular markers in maize PNAS, August 29, 2000; 97(18): 10083 - 10089. [Abstract] [Full Text] [PDF]
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A. Druka, D. Kudrna, C. G. Kannangara, D. von Wettstein, and A. Kleinhofs Physical and genetic mapping of barley (Hordeum vulgare) germin-like cDNAs PNAS, January 22, 2002; 99(2): 850 - 855. [Abstract] [Full Text] [PDF]
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H. Fu, W. Park, X. Yan, Z. Zheng, B. Shen, and H. K. Dooner From the Cover: The highly recombinogenic bz locus lies in an unusually gene-rich region of the maize genome PNAS, July 17, 2001; 98(15): 8903 - 8908. [Abstract] [Full Text] [PDF]
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B. C. Meyers, S. V. Tingey, and M. Morgante Abundance, Distribution, and Transcriptional Activity of Repetitive Elements in the Maize Genome Genome Res., October 1, 2001; 11(10): 1660 - 1676. [Abstract] [Full Text] [PDF]
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D. A. Wright and D. F. Voytas Athila4 of Arabidopsis and Calypso of Soybean Define a Lineage of Endogenous Plant Retroviruses Genome Res., January 1, 2002; 12(1): 122 - 131. [Abstract] [Full Text] [PDF]
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N. J. Bowen and J. F. McDonald Drosophila Euchromatic LTR Retrotransposons are Much Younger Than the Host Species in Which They Reside Genome Res., September 1, 2001; 11(9): 1527 - 1540. [Abstract] [Full Text] [PDF]
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