![[Feedback]](/icons/banner/feedbackACT.gif){kind=icon}
![[For Subscribers]](/icons/banner/subscriberACT.gif){kind=icon}
![[Archive]](/icons/banner/archiveACT.gif){kind=icon}
![[Search]](/icons/banner/searchACT.gif){kind=icon}
![[Contents]](/icons/banner/tocACT.gif){kind=icon}
|
|
|
|
|
||
|
Vol. 10, Issue 7, 1051-1060, July 2000
RESOURCE
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|
|
 |
|
  J.-T. Li, Y. Zhang, L. Kong, Q.-R. Liu, and L. Wei Trans-natural antisense transcripts including noncoding RNAs in 10 species: implications for expression regulation Nucleic Acids Res., July 24, 2008; (2008) gkn470v1. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 H. Alvarez, A. Corvalan, J. C. Roa, P. Argani, F. Murillo, J. Edwards, R. Beaty, G. Feldmann, S.-M. Hong, M. Mullendore, et al. Serial Analysis of Gene Expression Identifies Connective Tissue Growth Factor Expression as a Prognostic Biomarker in Gallbladder Cancer Clin. Cancer Res., May 1, 2008; 14(9): 2631 - 2638. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
Y.-H. Yang, H. Deng, W.-M. Li, Q.-Y. Zhang, X.-T. Hu, B. Xiao, H.-H. Zhu, P.-L. Geng, and Y.-Y. Lu Identification of Matrix Metalloproteinase 11 as a Predictive Tumor Marker in Serum Based on Gene Expression Profiling Clin. Cancer Res., January 1, 2008; 14(1): 74 - 81. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 C. B. Lupien, C. Bolduc, S. Landreville, and C. Salesse Comparison between the Gene Expression Profile of Human Muller Cells and Two Spontaneous Muller Cell Lines Invest. Ophthalmol. Vis. Sci., November 1, 2007; 48(11): 5229 - 5242. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
L. Bianchetti, Y. Wu, E. Guerin, F. Plewniak, and O. Poch SAGETTARIUS: a program to reduce the number of tags mapped to multiple transcripts and to plan SAGE sequencing stages Nucleic Acids Res., September 25, 2007; 35(18): e122 - e122. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 M. Yoshioka, A. Boivin, C. Bolduc, and J. St-Amand Gender difference of androgen actions on skeletal muscle transcriptome J. Mol. Endocrinol., August 1, 2007; 39(2): 119 - 133. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 B. Kim, H. J. Lee, H. Y. Choi, Y. Shin, S. Nam, G. Seo, D.-S. Son, J. Jo, J. Kim, J. Lee, et al. Clinical Validity of the Lung Cancer Biomarkers Identified by Bioinformatics Analysis of Public Expression Data Cancer Res., August 1, 2007; 67(15): 7431 - 7438. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
J. Degenhardt, M. Haubrock, J. Donitz, E. Wingender, and T. Crass DEEP--A tool for differential expression effector prediction Nucleic Acids Res., July 13, 2007; 35(suppl_2): W619 - W624. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
T. Norambuena, R. Malig, and F. Melo SAGExplore: a web server for unambiguous tag mapping in serial analysis of gene expression oriented to gene discovery and annotation Nucleic Acids Res., July 13, 2007; 35(suppl_2): W163 - W168. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 N. Osato, Y. Suzuki, K. Ikeo, and T. Gojobori Transcriptional Interferences in cis Natural Antisense Transcripts of Humans and Mice Genetics, June 1, 2007; 176(2): 1299 - 1306. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 P. A. F. Galante, J. Trimarchi, C. L. Cepko, S. J. de Souza, L. Ohno-Machado, and W. P. Kuo Automatic correspondence of tags and genes (ACTG): a tool for the analysis of SAGE, MPSS and SBS data Bioinformatics, April 1, 2007; 23(7): 903 - 905. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
M. A. A. Castro, J. C. M. Mombach, R. M. C. de Almeida, and J. C. F. Moreira Impaired expression of NER gene network in sporadic solid tumors Nucleic Acids Res., March 19, 2007; 35(6): 1859 - 1867. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 J. B. Vos, N. A. Datson, K. F. Rabe, and P. S. Hiemstra Exploring host-pathogen interactions at the epithelial surface: application of transcriptomics in lung biology Am J Physiol Lung Cell Mol Physiol, February 1, 2007; 292(2): L367 - L377. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
Y. Lee, Y. Lee, B. Kim, Y. Shin, S. Nam, P. Kim, N. Kim, W.-H. Chung, J. Kim, and S. Lee ECgene: an alternative splicing database update Nucleic Acids Res., January 12, 2007; 35(suppl_1): D99 - D103. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 K. F. Rodriguez, L. A. Blomberg, K. A. Zuelke, J. R. Miles, J. E. Alexander, and C. E. Farin Identification of candidate mRNAs associated with gonadotropin-induced maturation of murine cumulus oocyte complexes using serial analysis of gene expression Physiol Genomics, November 21, 2006; 27(3): 318 - 327. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 H. I. Alanen, R. A. Williamson, M. J. Howard, F. S. Hatahet, K. E. H. Salo, A. Kauppila, S. Kellokumpu, and L. W. Ruddock ERp27, a New Non-catalytic Endoplasmic Reticulum-located Human Protein Disulfide Isomerase Family Member, Interacts with ERp57 J. Biol. Chem., November 3, 2006; 281(44): 33727 - 33738. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 N. S. CAI, M. T MCCOY, B. LADENHEIM, J. LYLES, S. F ALI, and J. L. CADET Serial Analysis of Gene Expression in the Rat Striatum Following Methamphetamine Administration. Ann. N.Y. Acad. Sci., August 1, 2006; 1074: 13 - 30. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 P. L. Lorenzi, C. P. Landowski, A. Brancale, X. Song, L. B. Townsend, J. C. Drach, and G. L. Amidon N-METHYLPURINE DNA GLYCOSYLASE AND 8-OXOGUANINE DNA GLYCOSYLASE METABOLIZE THE ANTIVIRAL NUCLEOSIDE 2-BROMO-5,6-DICHLORO-1-({beta}-D-RIBOFURANOSYL)BENZIMIDAZOLE Drug Metab. Dispos., June 1, 2006; 34(6): 1070 - 1077. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 W. D. Patino, J.-G. Kang, S. Matoba, O. Y. Mian, B. R. Gochuico, and P. M. Hwang Atherosclerotic Plaque Macrophage Transcriptional Regulators Are Expressed in Blood and Modulated by Tristetraprolin Circ. Res., May 26, 2006; 98(10): 1282 - 1289. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 I. Y. Eyupoglu, E. Hahnen, C. Trankle, N. E. Savaskan, F. A. Siebzehnrubl, R. Buslei, D. Lemke, W. Wick, R. Fahlbusch, and I. Blumcke Experimental therapy of malignant gliomas using the inhibitor of histone deacetylase MS-275 Mol. Cancer Ther., May 1, 2006; 5(5): 1248 - 1255. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
X.-H. Ma, S.-J. Hu, H. Ni, Y.-C. Zhao, Z. Tian, J.-L. Liu, G. Ren, X.-H. Liang, H. Yu, P. Wan, et al. Serial Analysis of Gene Expression in Mouse Uterus at the Implantation Site J. Biol. Chem., April 7, 2006; 281(14): 9351 - 9360. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
M Yoshioka, A Boivin, P Ye, F Labrie, and J St-Amand Effects of dihydrotestosterone on skeletal muscle transcriptome in mice measured by serial analysis of gene expression. J. Mol. Endocrinol., April 1, 2006; 36(2): 247 - 259. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
Y. Nishida, M. Yoshioka, and J. St-Amand Regulation of hypothalamic gene expression by glucocorticoid: implications for energy homeostasis Physiol Genomics, March 13, 2006; 25(1): 96 - 104. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
X. Chen, J.-m. Wu, K. Hornischer, A. Kel, and E. Wingender TiProD: the Tissue-specific Promoter Database Nucleic Acids Res., January 1, 2006; 34(suppl_1): D104 - D107. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
A. Frigessi, M. A. van de Wiel, M. Holden, D. H. Svendsrud, I. K. Glad, and H. Lyng Genome-wide estimation of transcript concentrations from spotted cDNA microarray data Nucleic Acids Res., October 4, 2005; 33(17): e143 - e143. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
S. H. Chen, Y. Babichev, N. Rodrigues, D. Voskas, L. Ling, V. P. K. H. Nguyen, and D. J. Dumont Gene expression analysis of Tek/Tie2 signaling Physiol Genomics, July 14, 2005; 22(2): 257 - 267. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
R. Dolnick, Q. Wu, N. J. Angelino, L. V. Stephanie, K.-C. Chow, J. R. Sufrin, and B. J. Dolnick Enhancement of 5-Fluorouracil Sensitivity by an rTS Signaling Mimic in H630 Colon Cancer Cells Cancer Res., July 1, 2005; 65(13): 5917 - 5924. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
J. Pylouster, C. Senamaud-Beaufort, and T. E. Saison-Behmoaras WEBSAGE: a web tool for visual analysis of differentially expressed human SAGE tags Nucleic Acids Res., July 1, 2005; 33(suppl_2): W693 - W695. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
J. B. Vos, M. A. van Sterkenburg, K. F. Rabe, J. Schalkwijk, P. S. Hiemstra, and N. A. Datson Transcriptional response of bronchial epithelial cells to Pseudomonas aeruginosa: identification of early mediators of host defense Physiol Genomics, May 11, 2005; 21(3): 324 - 336. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
S. A. Vinterbo, E.-Y. Kim, and L. Ohno-Machado Small, fuzzy and interpretable gene expression based classifiers Bioinformatics, May 1, 2005; 21(9): 1964 - 1970. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
M. B. Wahl, U. Heinzmann, and K. Imai LongSAGE analysis significantly improves genome annotation: identifications of novel genes and alternative transcripts in the mouse Bioinformatics, April 15, 2005; 21(8): 1393 - 1400. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 N. Kim, S. Shin, and S. Lee ECgene: Genome-based EST clustering and gene modeling for alternative splicing Genome Res., April 1, 2005; 15(4): 566 - 576. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 W. D. Patino, O. Y. Mian, J.-G. Kang, S. Matoba, L. D. Bartlett, B. Holbrook, H. H. Trout III, L. Kozloff, and P. M. Hwang Circulating transcriptome reveals markers of atherosclerosis PNAS, March 1, 2005; 102(9): 3423 - 3428. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
S. Dinel, C. Bolduc, P. Belleau, A. Boivin, M. Yoshioka, E. Calvo, B. Piedboeuf, E. E. Snyder, F. Labrie, and J. St-Amand Reproducibility, bioinformatic analysis and power of the SAGE method to evaluate changes in transcriptome Nucleic Acids Res., February 16, 2005; 33(3): e26 - e26. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 C. L. Wei, T. Miura, P. Robson, S.-K. Lim, X.-Q. Xu, M. Y.-C. Lee, S. Gupta, L. Stanton, Y. Luo, J. Schmitt, et al. Transcriptome Profiling of Human and Murine ESCs Identifies Divergent Paths Required to Maintain the Stem Cell State Stem Cells, February 1, 2005; 23(2): 166 - 185. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
L. A. Blomberg, E. L. Long, T. S. Sonstegard, C. P. Van Tassell, J. R. Dobrinsky, and K. A. Zuelke Serial analysis of gene expression during elongation of the peri-implantation porcine trophectoderm (conceptus) Physiol Genomics, January 20, 2005; 20(2): 188 - 194. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
Y.-C. Chen, G. Pohl, T.-L. Wang, P. J. Morin, B. Risberg, G. B. Kristensen, A. Yu, B. Davidson, and I.-M. Shih Apolipoprotein E Is Required for Cell Proliferation and Survival in Ovarian Cancer Cancer Res., January 1, 2005; 65(1): 331 - 337. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 B. L. Eckhardt, B. S. Parker, R. K. van Laar, C. M. Restall, A. L. Natoli, M. D. Tavaria, K. L. Stanley, E. K. Sloan, J. M. Moseley, and R. L. Anderson Genomic Analysis of a Spontaneous Model of Breast Cancer Metastasis to Bone Reveals a Role for the Extracellular Matrix Mol. Cancer Res., January 1, 2005; 3(1): 1 - 13. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
P. Kim, N. Kim, Y. Lee, B. Kim, Y. Shin, and S. Lee ECgene: genome annotation for alternative splicing Nucleic Acids Res., January 1, 2005; 33(suppl_1): D75 - D79. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
A. Reverter, S. M. McWilliam, W. Barris, and B. P. Dalrymple A rapid method for computationally inferring transcriptome coverage and microarray sensitivity Bioinformatics, January 1, 2005; 21(1): 80 - 89. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 P. Carter, L. Smith, and M. Ryan Identification and validation of cell surface antigens for antibody targeting in oncology Endocr. Relat. Cancer, December 1, 2004; 11(4): 659 - 687. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
C Bolduc, M Larose, M Yoshioka, P Ye, P Belleau, C Labrie, J Morissette, V Raymond, F Labrie, and J St-Amand Effects of dihydrotestosterone on adipose tissue measured by serial analysis of gene expression J. Mol. Endocrinol., October 1, 2004; 33(2): 429 - 444. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 S. J. Robinson, D. J. Cram, C. T. Lewis, and I. A.P. Parkin Maximizing the Efficacy of SAGE Analysis Identifies Novel Transcripts in Arabidopsis Plant Physiology, October 1, 2004; 136(2): 3223 - 3233. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 M. T. Webster, N. G.C. Smith, M. J. Lercher, and H. Ellegren Gene Expression, Synteny, and Local Similarity in Human Noncoding Mutation Rates Mol. Biol. Evol., October 1, 2004; 21(10): 1820 - 1830. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
J. Chen, M. Sun, W. J. Kent, X. Huang, H. Xie, W. Wang, G. Zhou, R. Z. Shi, and J. D. Rowley Over 20% of human transcripts might form sense-antisense pairs Nucleic Acids Res., September 8, 2004; 32(16): 4812 - 4820. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
B. C. Meyers, S. S. Tej, T. H. Vu, C. D. Haudenschild, V. Agrawal, S. B. Edberg, H. Ghazal, and S. Decola The Use of MPSS for Whole-Genome Transcriptional Analysis in Arabidopsis Genome Res., August 1, 2004; 14(8): 1641 - 1653. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
M. R. Weil, P. Widlak, J. D. Minna, and H. R. Garner Global Survey of Chromatin Accessibility Using DNA Microarrays Genome Res., July 1, 2004; 14(7): 1374 - 1381. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
M. J. Lercher, J.-V. Chamary, and L. D. Hurst Genomic Regionality in Rates of Evolution Is Not Explained by Clustering of Genes of Comparable Expression Profile Genome Res., June 1, 2004; 14(6): 1002 - 1013. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
B. C. Meyers, D. K. Lee, T. H. Vu, S. S. Tej, S. B. Edberg, M. Matvienko, and L. D. Tindell Arabidopsis MPSS. An Online Resource for Quantitative Expression Analysis Plant Physiology, June 1, 2004; 135(2): 801 - 813. [Full Text] [PDF]
|
|
|
|
|
|
B. C. Meyers, D. W. Galbraith, T. Nelson, and V. Agrawal Methods for Transcriptional Profiling in Plants. Be Fruitful and Replicate Plant Physiology, June 1, 2004; 135(2): 637 - 652. [Full Text] [PDF]
|
|
|
|
 |
|
 D. Palmeri, F.-R. Zuo, S. D. Rosen, and S. Hemmerich Differential gene expression profile of human tonsil high endothelial cells: implications for lymphocyte trafficking J. Leukoc. Biol., May 1, 2004; 75(5): 910 - 927. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
A. S. J. Marshall, J. A. Willment, H.-H. Lin, D. L. Williams, S. Gordon, and G. D. Brown Identification and Characterization of a Novel Human Myeloid Inhibitory C-type Lectin-like Receptor (MICL) That Is Predominantly Expressed on Granulocytes and Monocytes J. Biol. Chem., April 9, 2004; 279(15): 14792 - 14802. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
H. R. Ueda, S. Hayashi, S. Matsuyama, T. Yomo, S. Hashimoto, S. A. Kay, J. B. Hogenesch, and M. Iino Universality and flexibility in gene expression from bacteria to human PNAS, March 16, 2004; 101(11): 3765 - 3769. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
A. Rump, Y. Morikawa, M. Tanaka, S. Minami, N. Umesaki, M. Takeuchi, and A. Miyajima Binding of Ovarian Cancer Antigen CA125/MUC16 to Mesothelin Mediates Cell Adhesion J. Biol. Chem., March 5, 2004; 279(10): 9190 - 9198. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 K. F. Nolan, V. Strong, D. Soler, P. J. Fairchild, S. P. Cobbold, R. Croxton, J.-A. Gonzalo, A. Rubio, M. Wells, and H. Waldmann IL-10-Conditioned Dendritic Cells, Decommissioned for Recruitment of Adaptive Immunity, Elicit Innate Inflammatory Gene Products in Response to Danger Signals J. Immunol., February 15, 2004; 172(4): 2201 - 2209. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
M. Richards, S.-P. Tan, J.-H. Tan, W.-K. Chan, and A. Bongso The Transcriptome Profile of Human Embryonic Stem Cells as Defined by SAGE Stem Cells, January 1, 2004; 22(1): 51 - 64. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
P. Divina and J. Forejt The Mouse SAGE Site: database of public mouse SAGE libraries Nucleic Acids Res., January 1, 2004; 32(90001): D482 - 483. [Abstract] |
