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Vol. 10, Issue 7, 1001-1010, July 2000
LETTER
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  M. Oshikawa, Y. Sugai, R. Usami, K. Ohtoko, S. Toyama, and S. Kato Fine Expression Profiling of Full-length Transcripts using a Size-unbiased cDNA Library Prepared with the Vector-capping Method DNA Res, May 16, 2008; (2008) dsn010v1. [Abstract] [Full Text] [PDF]
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 G. Stoecklin, S. A. Tenenbaum, T. Mayo, S. V. Chittur, A. D. George, T. E. Baroni, P. J. Blackshear, and P. Anderson Genome-wide Analysis Identifies Interleukin-10 mRNA as Target of Tristetraprolin J. Biol. Chem., April 25, 2008; 283(17): 11689 - 11699. [Abstract] [Full Text] [PDF]
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 B. L. Sartini, H. Wang, W. Wang, C. F. Millette, and D. L. Kilpatrick Pre-Messenger RNA Cleavage Factor I (CFIm): Potential Role in Alternative Polyadenylation During Spermatogenesis Biol Reprod, March 1, 2008; 78(3): 472 - 482. [Abstract] [Full Text] [PDF]
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 M. Davila Lopez and T. Samuelsson Early evolution of histone mRNA 3' end processing RNA, January 1, 2008; 14(1): 1 - 10. [Abstract] [Full Text] [PDF]
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 Y.-F. Chen, M. Shi, F. Huang, and X.-x. Chen Characterization of two genes of Cotesia vestalis polydnavirus and their expression patterns in the host Plutella xylostella J. Gen. Virol., December 1, 2007; 88(12): 3317 - 3322. [Abstract] [Full Text] [PDF]
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 C. P. Thomas, J. I. Andrews, and K. Z. Liu Intronic polyadenylation signal sequences and alternate splicing generate human soluble Flt1 variants and regulate the abundance of soluble Flt1 in the placenta FASEB J, December 1, 2007; 21(14): 3885 - 3895. [Abstract] [Full Text] [PDF]
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 N. L. Maciolek and M. T. McNally Serine/Arginine-Rich Proteins Contribute to Negative Regulator of Splicing Element-Stimulated Polyadenylation in Rous Sarcoma Virus J. Virol., October 15, 2007; 81(20): 11208 - 11217. [Abstract] [Full Text] [PDF]
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 L. Bianchetti, Y. Wu, E. Guerin, F. Plewniak, and O. Poch SAGETTARIUS: a program to reduce the number of tags mapped to multiple transcripts and to plan SAGE sequencing stages Nucleic Acids Res., September 25, 2007; 35(18): e122 - e122. [Abstract] [Full Text] [PDF]
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 M. Hashimoto, S. Tan, N. Mori, H. Cheng, and P.-W. Cheng Mucin biosynthesis: Molecular cloning and expression of mouse mucus-type core 2 {beta}1,6 N-acetylglucosaminyltransferase Glycobiology, September 1, 2007; 17(9): 994 - 1006. [Abstract] [Full Text] [PDF]
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 C.-S. Liang, A. Kobiyama, A. Shimizu, T. Sasaki, S. Asakawa, N. Shimizu, and S. Watabe Fast skeletal muscle myosin heavy chain gene cluster of medaka Oryzias latipes enrolled in temperature adaptation Physiol Genomics, April 24, 2007; 29(2): 201 - 214. [Abstract] [Full Text] [PDF]
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V. Moucadel, F. Lopez, T. Ara, P. Benech, and D. Gautheret Beyond the 3' end: experimental validation of extended transcript isoforms Nucleic Acids Res., March 19, 2007; 35(6): 1947 - 1957. [Abstract] [Full Text] [PDF]
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 B. Tian, Z. Pan, and J. Y. Lee Widespread mRNA polyadenylation events in introns indicate dynamic interplay between polyadenylation and splicing Genome Res., February 1, 2007; 17(2): 156 - 165. [Abstract] [Full Text] [PDF]
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D. Liu, J. M. Brockman, B. Dass, L. N. Hutchins, P. Singh, J. R. McCarrey, C. C. MacDonald, and J. H. Graber Systematic variation in mRNA 3'-processing signals during mouse spermatogenesis Nucleic Acids Res., January 12, 2007; 35(1): 234 - 246. [Abstract] [Full Text] [PDF]
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 H. Duan and C. R Jefcoate The predominant cAMP-stimulated 3.5 kb StAR mRNA contains specific sequence elements in the extended 3'UTR that confer high basal instability J. Mol. Endocrinol., January 1, 2007; 38(1): 159 - 179. [Abstract] [Full Text] [PDF]
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P. H. Maxwell, J. M. Belote, and R. W. Levis Identification of multiple transcription initiation, polyadenylation, and splice sites in the Drosophila melanogaster TART family of telomeric retrotransposons Nucleic Acids Res., November 14, 2006; 34(19): 5498 - 5507. [Abstract] [Full Text] [PDF]
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F. Lopez, S. Granjeaud, T. Ara, B. Ghattas, and D. Gautheret The disparate nature of "intergenic" polyadenylation sites RNA, October 1, 2006; 12(10): 1794 - 1801. [Abstract] [Full Text] [PDF]
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Y. Zhang, X. S. Liu, Q.-R. Liu, and L. Wei Genome-wide in silico identification and analysis of cis natural antisense transcripts (cis-NATs) in ten species Nucleic Acids Res., July 18, 2006; 34(12): 3465 - 3475. [Abstract] [Full Text] [PDF]
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 G. Temple, P. Lamesch, S. Milstein, D. E. Hill, L. Wagner, T. Moore, and M. Vidal From genome to proteome: developing expression clone resources for the human genome. Hum. Mol. Genet., April 15, 2006; 15(suppl_1): R31 - R43. [Abstract] [Full Text] [PDF]
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A. Graindorge, R. Thuret, N. Pollet, H. B. Osborne, and Y. Audic Identification of post-transcriptionally regulated Xenopus tropicalis maternal mRNAs by microarray Nucleic Acids Res., February 7, 2006; 34(3): 986 - 995. [Abstract] [Full Text] [PDF]
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S. D. Tyler and A. Severini The Complete Genome Sequence of Herpesvirus Papio 2 (Cercopithecine Herpesvirus 16) Shows Evidence of Recombination Events among Various Progenitor Herpesviruses J. Virol., February 1, 2006; 80(3): 1214 - 1221. [Abstract] [Full Text] [PDF]
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L. Costessi, G. Devescovi, F. E. Baralle, and A. F. Muro Brain-specific promoter and polyadenylation sites of the {beta}-adducin pre-mRNA generate an unusually long 3'-UTR Nucleic Acids Res., January 9, 2006; 34(1): 243 - 253. [Abstract] [Full Text] [PDF]
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S. A. Shell, C. Hesse, S. M. Morris Jr., and C. Milcarek Elevated Levels of the 64-kDa Cleavage Stimulatory Factor (CstF-64) in Lipopolysaccharide-stimulated Macrophages Influence Gene Expression and Induce Alternative Poly(A) Site Selection J. Biol. Chem., December 2, 2005; 280(48): 39950 - 39961. [Abstract] [Full Text] [PDF]
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C. D. Borgeson and M.-L. Samson Shared RNA-binding sites for interacting members of the Drosophila ELAV family of neuronal proteins Nucleic Acids Res., November 10, 2005; 33(19): 6372 - 6383. [Abstract] [Full Text] [PDF]
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J. HU, C. S. LUTZ, J. WILUSZ, and B. TIAN Bioinformatic identification of candidate cis-regulatory elements involved in human mRNA polyadenylation RNA, October 1, 2005; 11(10): 1485 - 1493. [Abstract] [Full Text] [PDF]
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 J. M. Brockman, P. Singh, D. Liu, S. Quinlan, J. Salisbury, and J. H. Graber PACdb: PolyA Cleavage Site and 3'-UTR Database Bioinformatics, September 15, 2005; 21(18): 3691 - 3693. [Abstract] [Full Text] [PDF]
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M. Bego, J. Maciejewski, S. Khaiboullina, G. Pari, and S. St. Jeor Characterization of an Antisense Transcript Spanning the UL81-82 Locus of Human Cytomegalovirus J. Virol., September 1, 2005; 79(17): 11022 - 11034. [Abstract] [Full Text] [PDF]
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 W. Jiang, O. Prokopenko, L. Wong, M. Inouye, and O. Mirochnitchenko IRIP, a New Ischemia/Reperfusion-Inducible Protein That Participates in the Regulation of Transporter Activity Mol. Cell. Biol., August 1, 2005; 25(15): 6496 - 6508. [Abstract] [Full Text] [PDF]
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 J. C. Loke, E. A. Stahlberg, D. G. Strenski, B. J. Haas, P. C. Wood, and Q. Q. Li Compilation of mRNA Polyadenylation Signals in Arabidopsis Revealed a New Signal Element and Potential Secondary Structures Plant Physiology, July 1, 2005; 138(3): 1457 - 1468. [Abstract] [Full Text] [PDF]
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 K. Venkataraman, K. M. Brown, and G. M. Gilmartin Analysis of a noncanonical poly(A) site reveals a tripartite mechanism for vertebrate poly(A) site recognition Genes & Dev., June 1, 2005; 19(11): 1315 - 1327. [Abstract] [Full Text] [PDF]
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B. Maiti, J. Li, A. de Bruin, F. Gordon, C. Timmers, R. Opavsky, K. Patil, J. Tuttle, W. Cleghorn, and G. Leone Cloning and Characterization of Mouse E2F8, a Novel Mammalian E2F Family Member Capable of Blocking Cellular Proliferation J. Biol. Chem., May 6, 2005; 280(18): 18211 - 18220. [Abstract] [Full Text] [PDF]
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W. Maccheroni, M. C. Alegria, C. C. Greggio, J. P. Piazza, R. F. Kamla, P. R. A. Zacharias, M. Bar-Joseph, E. W. Kitajima, L. C. Assumpcao, G. Camarotte, et al. Identification and Genomic Characterization of a New Virus (Tymoviridae Family) Associated with Citrus Sudden Death Disease J. Virol., March 1, 2005; 79(5): 3028 - 3037. [Abstract] [Full Text] [PDF]
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J. Yan and T. G. Marr Computational analysis of 3'-ends of ESTs shows four classes of alternative polyadenylation in human, mouse, and rat Genome Res., March 1, 2005; 15(3): 369 - 375. [Abstract] [Full Text] [PDF]
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M. Sachchithananthan, S. J. Stasinopoulos, J. Wilusz, and R. L. Medcalf The relationship between the prothrombin upstream sequence element and the G20210A polymorphism: the influence of a competitive environment for mRNA 3'-end formation Nucleic Acids Res., February 17, 2005; 33(3): 1010 - 1020. [Abstract] [Full Text] [PDF]
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Z. Dominski, X.-c. Yang, M. Purdy, E. J. Wagner, and W. F. Marzluff A CPSF-73 Homologue Is Required for Cell Cycle Progression but Not Cell Growth and Interacts with a Protein Having Features of CPSF-100 Mol. Cell. Biol., February 15, 2005; 25(4): 1489 - 1500. [Abstract] [Full Text] [PDF]
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B. Tian, J. Hu, H. Zhang, and C. S. Lutz A large-scale analysis of mRNA polyadenylation of human and mouse genes Nucleic Acids Res., January 12, 2005; 33(1): 201 - 212. [Abstract] [Full Text] [PDF]
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 E. Seli, M. D. Lalioti, S. M. Flaherty, D. Sakkas, N. Terzi, and J. A. Steitz An embryonic poly(A)-binding protein (ePAB) is expressed in mouse oocytes and early preimplantation embryos PNAS, January 11, 2005; 102(2): 367 - 372. [Abstract] [Full Text] [PDF]
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H. Zhang, J. Hu, M. Recce, and B. Tian PolyA_DB: a database for mammalian mRNA polyadenylation Nucleic Acids Res., January 1, 2005; 33(suppl_1): D116 - D120. [Abstract] [Full Text] [PDF]
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L. Ding, A. Sabo, N. Berkowicz, R. R. Meyer, Y. Shotland, M. R. Johnson, K. H. Pepin, R. K. Wilson, and J. Spieth EAnnot: A genome annotation tool using experimental evidence Genome Res., December 1, 2004; 14(12): 2503 - 2509. [Abstract] [Full Text] [PDF]
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 H. Hanawa, P. W. Hargrove, S. Kepes, D. K. Srivastava, A. W. Nienhuis, and D. A. Persons Extended {beta}-globin locus control region elements promote consistent therapeutic expression of a {gamma}-globin lentiviral vector in murine {beta}-thalassemia Blood, October 15, 2004; 104(8): 2281 - 2290. [Abstract] [Full Text] [PDF]
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M. SAWATA, H. TAKEUCHI, and T. KUBO Identification and analysis of the minimal promoter activity of a novel noncoding nuclear RNA gene, AncR-1, from the honeybee (Apis mellifera L.) RNA, July 1, 2004; 10(7): 1047 - 1058. [Abstract] [Full Text] [PDF]
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C. G. Noble, P. A. Walker, L. J. Calder, and I. A. Taylor Rna14-Rna15 assembly mediates the RNA-binding capability of Saccharomyces cerevisiae cleavage factor IA Nucleic Acids Res., June 23, 2004; 32(11): 3364 - 3375. [Abstract] [Full Text] [PDF]
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M. Inman, J. Zhou, H. Webb, and C. Jones Identification of a Novel Bovine Herpesvirus 1 Transcript Containing a Small Open Reading Frame That Is Expressed in Trigeminal Ganglia of Latently Infected Cattle J. Virol., May 15, 2004; 78(10): 5438 - 5447. [Abstract] [Full Text] [PDF]
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 C. A. Borgono, I. P. Michael, and E. P. Diamandis Human Tissue Kallikreins: Physiologic Roles and Applications in Cancer Mol. Cancer Res., May 1, 2004; 2(5): 257 - 280. [Abstract] [Full Text] [PDF]
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J. J.S. Laffin, T. E. Scheetz, M. de Fatima Bonaldo, R. S. Reiter, S. Chang, M. Eyestone, H. Abdulkawy, B. Brown, C. Roberts, D. Tack, et al. A comprehensive nonredundant expressed sequence tag collection for the developing Rattus norvegicus heart Physiol Genomics, April 13, 2004; 17(2): 245 - 252. [Abstract] [Full Text] [PDF]
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T. E. Scheetz, J. J. Laffin, B. Berger, S. Holte, S. A. Baumes, R. Brown II, S. Chang, J. Coco, J. Conklin, K. Crouch, et al. High-Throughput Gene Discovery in the Rat Genome Res., April 1, 2004; 14(4): 733 - 741. [Abstract] [Full Text] [PDF]
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T. E. Scheetz, J. Zabner, M. J. Welsh, J. Coco, M. Eyestone, M. de Fatima Bonaldo, T. Kucaba, T. L. Casavant, M. B. Soares, and P. B. McCray Jr. Large-scale gene discovery in human airway epithelia reveals novel transcripts Physiol Genomics, March 12, 2004; 17(1): 69 - 77. [Abstract] [Full Text] [PDF]
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K. de Graaf, P. Hekerman, O. Spelten, A. Herrmann, L. C. Packman, K. Bussow, G. Muller-Newen, and W. Becker Characterization of Cyclin L2, a Novel Cyclin with an Arginine/Serine-rich Domain: PHOSPHORYLATION BY DYRK1A AND COLOCALIZATION WITH SPLICING FACTORS J. Biol. Chem., February 6, 2004; 279(6): 4612 - 4624. [Abstract] [Full Text] [PDF]
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 K. Beck, K. Hayashi, B. Nishiguchi, O. Le Saux, M. Hayashi, and C. D. Boyd The Distribution of Abcc6 in Normal Mouse Tissues Suggests Multiple Functions for this ABC Transporter J. Histochem. Cytochem., July 1, 2003; 51(7): 887 - 902. [Abstract] [Full Text] [PDF]
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H. Richard and G. Nuel SPA: simple web tool to assess statistical significance of DNA patterns Nucleic Acids Res., July 1, 2003; 31(13): 3679 - 3681. [Abstract] [Full Text] [PDF]
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P. Carninci, K. Waki, T. Shiraki, H. Konno, K. Shibata, M. Itoh, K. Aizawa, T. Arakawa, Y. Ishii, D. Sasaki, et al. Targeting a Complex Transcriptome: The Construction of the Mouse Full-Length cDNA Encyclopedia Genome Res., June 1, 2003; 13(6): 1273 - 1289. [Abstract] [Full Text] [PDF]
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A. Volz, A. Ehlers, R. Younger, S. Forbes, J. Trowsdale, D. Schnorr, S. Beck, and A. Ziegler Complex Transcription and Splicing of Odorant Receptor Genes J. Biol. Chem., May 23, 2003; 278(22): 19691 - 19701. [Abstract] [Full Text] [PDF]
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P. Unneberg, A. Wennborg, and M. Larsson Transcript identification by analysis of short sequence tags--influence of tag length, restriction site and transcript database Nucleic Acids Res., April 15, 2003; 31(8): 2217 - 2226. [Abstract] [Full Text] [PDF]
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C. Copie-Bergman, M.-L. Boulland, C. Dehoulle, P. Moller, J.-P. Farcet, M. J. S. Dyer, C. Haioun, P.-H. Romeo, P. Gaulard, and K. Leroy Interleukin 4-induced gene 1 is activated in primary mediastinal large B-cell lymphoma Blood, April 1, 2003; 101(7): 2756 - 2761. [Abstract] [Full Text] [PDF]
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M. I. Zarudnaya, I. M. Kolomiets, A. L. Potyahaylo, and D. M. Hovorun Downstream elements of mammalian pre-mRNA polyadenylation signals: primary, secondary and higher-order structures Nucleic Acids Res., March 1, 2003; 31(5): 1375 - 1386. [Abstract] [Full Text] [PDF]
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 M. de Carvalho, H. Houlden, C. Goizet, and D. Lacombe Progressive bulbospinal amyotrophy in triple A syndrome with AAAS gene mutation Neurology, December 10, 2002; 59(11): 1823 - 1823. [Full Text] [PDF]
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 Y. Miyagawa, H. Tanaka, N. Iguchi, K. Kitamura, Y. Nakamura, T. Takahashi, K. Matsumiya, A. Okuyama, and Y. Nishimune Molecular cloning and characterization of the human orthologue of male germ cell-specific actin capping protein {alpha}3 (cp{alpha}3) Mol. Hum. Reprod., June 1, 2002; 8(6): 531 - 539. [Abstract] [Full Text] [PDF] |
