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Vol. 10, Issue 4, 577-586, April 2000
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  J. R. Grant and P. Stothard The CGView Server: a comparative genomics tool for circular genomes Nucleic Acids Res., July 1, 2008; 36(suppl_2): W181 - W184. [Abstract] [Full Text] [PDF]
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 M. Naito, H. Hirakawa, A. Yamashita, N. Ohara, M. Shoji, H. Yukitake, K. Nakayama, H. Toh, F. Yoshimura, S. Kuhara, et al. Determination of the Genome Sequence of Porphyromonas gingivalis Strain ATCC 33277 and Genomic Comparison with Strain W83 Revealed Extensive Genome Rearrangements in P. gingivalis DNA Res, June 3, 2008; (2008) dsn013v1. [Abstract] [Full Text] [PDF]
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 E. Darai-Ramqvist, A. Sandlund, S. Muller, G. Klein, S. Imreh, and M. Kost-Alimova Segmental duplications and evolutionary plasticity at tumor chromosome break-prone regions Genome Res., March 1, 2008; 18(3): 370 - 379. [Abstract] [Full Text] [PDF]
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 J. F. Storz, F. G. Hoffmann, J. C. Opazo, and H. Moriyama Adaptive Functional Divergence Among Triplicated {alpha}-Globin Genes in Rodents Genetics, March 1, 2008; 178(3): 1623 - 1638. [Abstract] [Full Text] [PDF]
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 F. G. Hoffmann, J. C. Opazo, and J. F. Storz Rapid Rates of Lineage-Specific Gene Duplication and Deletion in the {alpha}-Globin Gene Family Mol. Biol. Evol., March 1, 2008; 25(3): 591 - 602. [Abstract] [Full Text] [PDF]
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 J. C. Pennycooke, H. Cheng, and E. J. Stockinger Comparative Genomic Sequence and Expression Analyses of Medicago truncatula and Alfalfa Subspecies falcata COLD-ACCLIMATION-SPECIFIC Genes Plant Physiology, March 1, 2008; 146(3): 1242 - 1254. [Abstract] [Full Text] [PDF]
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N. A. Ayoub and C. Y. Hayashi Multiple Recombining Loci Encode MaSp1, the Primary Constituent of Dragline Silk, in Widow Spiders (Latrodectus: Theridiidae) Mol. Biol. Evol., February 1, 2008; 25(2): 277 - 286. [Abstract] [Full Text] [PDF]
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N. J. Wickett, Y. Zhang, S. K. Hansen, J. M. Roper, J. V. Kuehl, S. A. Plock, P. G. Wolf, C. W. dePamphilis, J. L. Boore, and B. Goffinet Functional Gene Losses Occur with Minimal Size Reduction in the Plastid Genome of the Parasitic Liverwort Aneura mirabilis Mol. Biol. Evol., February 1, 2008; 25(2): 393 - 401. [Abstract] [Full Text] [PDF]
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 W. T. Nottingham, A. Jarratt, M. Burgess, C. L. Speck, J.-F. Cheng, S. Prabhakar, E. M. Rubin, P.-S. Li, J. Sloane-Stanley, J. Kong-a-San, et al. Runx1-mediated hematopoietic stem-cell emergence is controlled by a Gata/Ets/SCL-regulated enhancer Blood, December 15, 2007; 110(13): 4188 - 4197. [Abstract] [Full Text] [PDF]
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 N. Bosch, M. Caceres, M. F. Cardone, A. Carreras, E. Ballana, M. Rocchi, L. Armengol, and X. Estivill Characterization and evolution of the novel gene family FAM90A in primates originated by multiple duplication and rearrangement events Hum. Mol. Genet., November 1, 2007; 16(21): 2572 - 2582. [Abstract] [Full Text] [PDF]
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 V. F. Bumaschny, F. S. J. de Souza, R. A. Lopez Leal, A. M. Santangelo, M. Baetscher, D. H. Levi, M. J. Low, and M. Rubinstein Transcriptional Regulation of Pituitary POMC Is Conserved at the Vertebrate Extremes Despite Great Promoter Sequence Divergence Mol. Endocrinol., November 1, 2007; 21(11): 2738 - 2749. [Abstract] [Full Text] [PDF]
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L. Gordon, S. Yang, M. Tran-Gyamfi, D. Baggott, M. Christensen, A. Hamilton, R. Crooijmans, M. Groenen, S. Lucas, I. Ovcharenko, et al. Comparative analysis of chicken chromosome 28 provides new clues to the evolutionary fragility of gene-rich vertebrate regions Genome Res., November 1, 2007; 17(11): 1603 - 1613. [Abstract] [Full Text] [PDF]
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A. L. Evans, P. A. Mena, and B. F. McAllister Positive Selection Near an Inversion Breakpoint on the Neo-X Chromosome of Drosophila americana Genetics, November 1, 2007; 177(3): 1303 - 1319. [Abstract] [Full Text] [PDF]
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J. O. Allen, C. M. Fauron, P. Minx, L. Roark, S. Oddiraju, G. N. Lin, L. Meyer, H. Sun, K. Kim, C. Wang, et al. Comparisons Among Two Fertile and Three Male-Sterile Mitochondrial Genomes of Maize Genetics, October 1, 2007; 177(2): 1173 - 1192. [Abstract] [Full Text] [PDF]
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 H. W. J. Young, O. W. Williams, D. Chandra, L. K. Bellinghausen, G. Perez, A. Suarez, M. J. Tuvim, M. G. Roy, S. N. Alexander, S. J. Moghaddam, et al. Central Role of Muc5ac Expression in Mucous Metaplasia and Its Regulation by Conserved 5' Elements Am. J. Respir. Cell Mol. Biol., September 1, 2007; 37(3): 273 - 290. [Abstract] [Full Text] [PDF]
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 N. Yuhki, T. Beck, R. Stephens, B. Neelam, and S. J. O'Brien Comparative Genomic Structure of Human, Dog, and Cat MHC: HLA, DLA, and FLA J. Hered., August 3, 2007; (2007) esm056v1. [Abstract] [Full Text] [PDF]
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 M. Barbaro, M. Oscarson, J. Schoumans, J. Staaf, S. A. Ivarsson, and A. Wedell Isolated 46,XY Gonadal Dysgenesis in Two Sisters Caused by a Xp21.2 Interstitial Duplication Containing the DAX1 Gene J. Clin. Endocrinol. Metab., August 1, 2007; 92(8): 3305 - 3313. [Abstract] [Full Text] [PDF]
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H.-Y. Ou, X. He, E. M. Harrison, B. R. Kulasekara, A. B. Thani, A. Kadioglu, S. Lory, J. C. D. Hinton, M. R. Barer, Z. Deng, et al. MobilomeFINDER: web-based tools for in silico and experimental discovery of bacterial genomic islands Nucleic Acids Res., July 13, 2007; 35(suppl_2): W97 - W104. [Abstract] [Full Text] [PDF]
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S. Robbens, E. Derelle, C. Ferraz, J. Wuyts, H. Moreau, and Y. Van de Peer The Complete Chloroplast and Mitochondrial DNA Sequence of Ostreococcus tauri: Organelle Genomes of the Smallest Eukaryote Are Examples of Compaction Mol. Biol. Evol., April 1, 2007; 24(4): 956 - 968. [Abstract] [Full Text] [PDF]
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 R. E. Timme, J. V. Kuehl, J. L. Boore, and R. K. Jansen A comparative analysis of the Lactuca and Helianthus (Asteraceae) plastid genomes: identification of divergent regions and categorization of shared repeats Am. J. Botany, March 1, 2007; 94(3): 302 - 312. [Abstract] [Full Text] [PDF]
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 M. K. Nyholm, S.-F. Wu, R. I. Dorsky, and Y. Grinblat The zebrafish zic2a-zic5 gene pair acts downstream of canonical Wnt signaling to control cell proliferation in the developing tectum Development, February 15, 2007; 134(4): 735 - 746. [Abstract] [Full Text] [PDF]
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 E. A. Ivakine, S. M. Mortin-Toth, O. M. Gulban, A. Valova, A. Canty, C. Scott, and J. S. Danska The Idd4 Locus Displays Sex-Specific Epistatic Effects on Type 1 Diabetes Susceptibility in Nonobese Diabetic Mice Diabetes, December 1, 2006; 55(12): 3611 - 3619. [Abstract] [Full Text] [PDF]
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 M. D. Wilson, J. Cheung, D. W. Martindale, S. W. Scherer, and B. F. Koop Comparative analysis of the paired immunoglobulin-like receptor (PILR) locus in six mammalian genomes: duplication, conversion, and the birth of new genes Physiol Genomics, November 21, 2006; 27(3): 201 - 218. [Abstract] [Full Text] [PDF]
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S. Saito and R. Shingai Evolution of thermoTRP ion channel homologs in vertebrates Physiol Genomics, November 21, 2006; 27(3): 219 - 230. [Abstract] [Full Text] [PDF]
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Y. Tamimi, J. M. Skarie, T. Footz, F. B. Berry, B. A. Link, and M. A. Walter FGF19 is a target for FOXC1 regulation in ciliary body-derived cells Hum. Mol. Genet., November 1, 2006; 15(21): 3229 - 3240. [Abstract] [Full Text] [PDF]
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 A. M. Casa, S. E. Mitchell, J. D. Jensen, M. T. Hamblin, A. H. Paterson, C. F. Aquadro, and S. Kresovich Evidence for a Selective Sweep on Chromosome 1 of Cultivated Sorghum Crop Sci., November 1, 2006; 46(Supplement_1): S-27 - S-40. [Abstract] [Full Text] [PDF]
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 P. Bhatti, D. M. Church, J. L. Rutter, J. P. Struewing, and A. J. Sigurdson Candidate Single Nucleotide Polymorphism Selection using Publicly Available Tools: A Guide for Epidemiologists Am. J. Epidemiol., October 15, 2006; 164(8): 794 - 804. [Abstract] [Full Text] [PDF]
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C. B. Kaelin, L. Gong, A. W. Xu, F. Yao, K. Hockman, G. J. Morton, M. W. Schwartz, G. S. Barsh, and R. G. MacKenzie Signal Transducer and Activator of Transcription (Stat) Binding Sites But Not Stat3 Are Required for Fasting-Induced Transcription of Agouti-Related Protein Messenger Ribonucleic Acid Mol. Endocrinol., October 1, 2006; 20(10): 2591 - 2602. [Abstract] [Full Text] [PDF]
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S. K. Das, W. S. Chu, T. C. Hale, X. Wang, R. L. Craig, H. Wang, A. R. Shuldiner, P. Froguel, P. Deloukas, M. I. McCarthy, et al. Polymorphisms in the Glucokinase-Associated, Dual-Specificity Phosphatase 12 (DUSP12) Gene Under Chromosome 1q21 Linkage Peak Are Associated With Type 2 Diabetes Diabetes, September 1, 2006; 55(9): 2631 - 2639. [Abstract] [Full Text] [PDF]
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M. A. Bender, R. Byron, T. Ragoczy, A. Telling, M. Bulger, and M. Groudine Flanking HS-62.5 and 3' HS1, and regions upstream of the LCR, are not required for beta-globin transcription Blood, August 15, 2006; 108(4): 1395 - 1401. [Abstract] [Full Text] [PDF]
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 J.-S. Su, T.-F. Tsai, H.-M. Chang, K.-M. Chao, T.-S. Su, and S.-F. Tsai Distant HNF1 Site as a Master Control for the Human Class I Alcohol Dehydrogenase Gene Expression J. Biol. Chem., July 21, 2006; 281(29): 19809 - 19821. [Abstract] [Full Text] [PDF]
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D. GuhaThakurta Computational identification of transcriptional regulatory elements in DNA sequence Nucleic Acids Res., July 19, 2006; 34(12): 3585 - 3598. [Abstract] [Full Text] [PDF]
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 S. P. Duffy, A. M. Young, B. Morin, C. J. Lucarotti, B. F. Koop, and D. B. Levin Sequence Analysis and Organization of the Neodiprion abietis Nucleopolyhedrovirus Genome J. Virol., July 15, 2006; 80(14): 6952 - 6963. [Abstract] [Full Text] [PDF]
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 G. Obernosterer, P. J.F. Leuschner, M. Alenius, and J. Martinez Post-transcriptional regulation of microRNA expression RNA, July 1, 2006; 12(7): 1161 - 1167. [Abstract] [Full Text] [PDF]
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 Q. Zhang, X. Su, S. Gong, Q. Zeng, B. Zhu, Z. Wu, T. Peng, C. Zhang, and R. Zhou Comparative genomic analysis of two strains of human adenovirus type 3 isolated from children with acute respiratory infection in southern China J. Gen. Virol., June 1, 2006; 87(6): 1531 - 1541. [Abstract] [Full Text] [PDF]
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M. Withers, L. Wernisch, and M. d. Reis Archaeology and evolution of transfer RNA genes in the Escherichia coli genome RNA, June 1, 2006; 12(6): 933 - 942. [Abstract] [Full Text] [PDF]
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 C. S. Han, G. Xie, J. F. Challacombe, M. R. Altherr, S. S. Bhotika, D. Bruce, C. S. Campbell, M. L. Campbell, J. Chen, O. Chertkov, et al. Pathogenomic Sequence Analysis of Bacillus cereus and Bacillus thuringiensis Isolates Closely Related to Bacillus anthracis J. Bacteriol., May 1, 2006; 188(9): 3382 - 3390. [Abstract] [Full Text] [PDF]
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M. Caceres, NISC Comparative Sequencing Program, and J. W. Thomas The Gene of Retroviral Origin Syncytin 1 is Specific to Hominoids and is Inactive in Old World Monkeys J. Hered., March 1, 2006; 97(2): 100 - 106. [Abstract] [Full Text] [PDF]
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E. A. Ivakine, O. M. Gulban, S. M. Mortin-Toth, E. Wankiewicz, C. Scott, D. Spurrell, A. Canty, and J. S. Danska Molecular genetic analysis of the idd4 locus implicates the IFN response in type 1 diabetes susceptibility in nonobese diabetic mice. J. Immunol., March 1, 2006; 176(5): 2976 - 2990. [Abstract] [Full Text] [PDF]
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A. Antonellis, W. R. Bennett, T. R. Menheniott, A. B. Prasad, S.-Q. Lee-Lin, NISC Comparative Sequencing Program, E. D. Green, D. Paisley, R. N. Kelsh, W. J. Pavan, et al. Deletion of long-range sequences at Sox10 compromises developmental expression in a mouse model of Waardenburg-Shah (WS4) syndrome Hum. Mol. Genet., January 15, 2006; 15(2): 259 - 271. [Abstract] [Full Text] [PDF]
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C. L. ZHENG, X.-D. FU, and M. GRIBSKOV Characteristics and regulatory elements defining constitutive splicing and different modes of alternative splicing in human and mouse RNA, December 1, 2005; 11(12): 1777 - 1787. [Abstract] [Full Text] [PDF]
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E. A. Jones and R. A. Flavell Distal Enhancer Elements Transcribe Intergenic RNA in the IL-10 Family Gene Cluster J. Immunol., December 1, 2005; 175(11): 7437 - 7446. [Abstract] [Full Text] [PDF]
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F. M. Pauler, S. H. Stricker, K. E. Warczok, and D. P. Barlow Long-range DNase I hypersensitivity mapping reveals the imprinted Igf2r and Air promoters share cis-regulatory elements Genome Res., October 1, 2005; 15(10): 1379 - 1387. [Abstract] [Full Text] [PDF]
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X. Pan, L. Stein, and V. Brendel SynBrowse: a synteny browser for comparative sequence analysis Bioinformatics, September 1, 2005; 21(17): 3461 - 3468. [Abstract] [Full Text] [PDF]
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J.-F. Pombert, C. Otis, C. Lemieux, and M. Turmel The Chloroplast Genome Sequence of the Green Alga Pseudendoclonium akinetum (Ulvophyceae) Reveals Unusual Structural Features and New Insights into the Branching Order of Chlorophyte Lineages Mol. Biol. Evol., September 1, 2005; 22(9): 1903 - 1918. [Abstract] [Full Text] [PDF]
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A. Siepel, G. Bejerano, J. S. Pedersen, A. S. Hinrichs, M. Hou, K. Rosenbloom, H. Clawson, J. Spieth, L. W. Hillier, S. Richards, et al. Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes Genome Res., August 1, 2005; 15(8): 1034 - 1050. [Abstract] [Full Text] [PDF]
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E. de la Calle-Mustienes, C. G. Feijoo, M. Manzanares, J. J. Tena, E. Rodriguez-Seguel, A. Letizia, M. L. Allende, and J. L. Gomez-Skarmeta A functional survey of the enhancer activity of conserved non-coding sequences from vertebrate Iroquois cluster gene deserts Genome Res., August 1, 2005; 15(8): 1061 - 1072. [Abstract] [Full Text] [PDF]
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H. Diekmann, M. Klinger, T. Oertle, D. Heinz, H.-M. Pogoda, M. E. Schwab, and C. A. O. Stuermer Analysis of the Reticulon Gene Family Demonstrates the Absence of the Neurite Growth Inhibitor Nogo-A in Fish Mol. Biol. Evol., August 1, 2005; 22(8): 1635 - 1648. [Abstract] [Full Text] [PDF]
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 A. Purkayastha, J. Su, J. McGraw, S. E. Ditty, T. L. Hadfield, J. Seto |
A Web Server for Aligning Two Genomic DNA Sequences