![[Feedback]](/icons/banner/feedbackACT.gif){kind=icon}
![[For Subscribers]](/icons/banner/subscriberACT.gif){kind=icon}
![[Archive]](/icons/banner/archiveACT.gif){kind=icon}
![[Search]](/icons/banner/searchACT.gif){kind=icon}
![[Contents]](/icons/banner/tocACT.gif){kind=icon}
|
|
|
|
|
||
|
Vol. 10, Issue 2, 258-266, February 2000
METHODS
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|
|
 |
|
  I. D. Bezemer, L. A. Bare, C. J. M. Doggen, A. R. Arellano, C. Tong, C. M. Rowland, J. Catanese, B. A. Young, P. H. Reitsma, J. J. Devlin, et al. Gene Variants Associated With Deep Vein Thrombosis JAMA, March 19, 2008; 299(11): 1306 - 1314. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 Y. Li, A. Grupe, C. Rowland, P. Holmans, R. Segurado, R. Abraham, L. Jones, J. Catanese, D. Ross, K. Mayo, et al. Evidence that common variation in NEDD9 is associated with susceptibility to late-onset Alzheimer's and Parkinson's disease Hum. Mol. Genet., March 1, 2008; 17(5): 759 - 767. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 G. R. Uhl, T. Drgon, Q.-R. Liu, C. Johnson, D. Walther, T. Komiyama, M. Harano, Y. Sekine, T. Inada, N. Ozaki, et al. Genome-Wide Association for Methamphetamine Dependence: Convergent Results From 2 Samples Arch Gen Psychiatry, March 1, 2008; 65(3): 345 - 355. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 M. S. Sabatine, L. Ploughman, K. L. Simonsen, O. A. Iakoubova, T. G. Kirchgessner, K. Ranade, Z. Tsuchihashi, K. E. Zerba, D. U. Long, C. H. Tong, et al. Association Between ADAMTS1 Matrix Metalloproteinase Gene Variation, Coronary Heart Disease, and Benefit of Statin Therapy Arterioscler. Thromb. Vasc. Biol., March 1, 2008; 28(3): 562 - 567. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 O. A. Iakoubova, M. S. Sabatine, C. M. Rowland, C. H. Tong, J. J. Catanese, K. Ranade, K. L. Simonsen, T. G. Kirchgessner, C. P. Cannon, J. J. Devlin, et al. Polymorphism in KIF6 gene and benefit from statins after acute coronary syndromes: results from the PROVE IT-TIMI 22 study. J. Am. Coll. Cardiol., January 29, 2008; 51(4): 449 - 455. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 B. C. Satterfield, D. A. Kulesh, D. A. Norwood, L. P. Wasieloski Jr, M. R. Caplan, and J. A.A. West Tentacle ProbesTM: Differentiation of Difficult Single-Nucleotide Polymorphisms and Deletions by Presence or Absence of a Signal in Real-Time PCR Clin. Chem., December 1, 2007; 53(12): 2042 - 2050. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 B. Kirkpatrick, C. S. Armendariz, R. M. Karp, and E. Halperin HAPLOPOOL: improving haplotype frequency estimation through DNA pools and phylogenetic modeling Bioinformatics, November 15, 2007; 23(22): 3048 - 3055. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 T. A. King, W. Li, E. Brogi, C. J. Yee, M. L. Gemignani, N. Olvera, D. A. Levine, L. Norton, M. E. Robson, K. Offit, et al. Heterogenic Loss of the Wild-Type BRCA Allele in Human Breast Tumorigenesis Ann. Surg. Oncol., September 1, 2007; 14(9): 2510 - 2518. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 T. Johnson Bayesian method for gene detection and mapping, using a case and control design and DNA pooling Biostat., July 1, 2007; 8(3): 546 - 565. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
A. Grupe, R. Abraham, Y. Li, C. Rowland, P. Hollingworth, A. Morgan, L. Jehu, R. Segurado, D. Stone, E. Schadt, et al. Evidence for novel susceptibility genes for late-onset Alzheimer's disease from a genome-wide association study of putative functional variants Hum. Mol. Genet., April 15, 2007; 16(8): 865 - 873. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 J. Wesoly, X. Hu, M. M. Thabet, M. Chang, H. Uh, C. F. Allaart, R. E. M. Toes, J. J. Houwing-Duistermaat, A. B. Begovich, and T. W. J. Huizinga The 620W allele is the PTPN22 genetic variant conferring susceptibility to RA in a Dutch population Rheumatology, April 1, 2007; 46(4): 617 - 621. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 G. S. Atwal, G. L. Bond, S. Metsuyanim, M. Papa, E. Friedman, T. Distelman-Menachem, E. Ben Asher, D. Lancet, D. A. Ross, J. Sninsky, et al. Haplotype structure and selection of the MDM2 oncogene in humans PNAS, March 13, 2007; 104(11): 4524 - 4529. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 M J Bugeja, D R Booth, B H Bennetts, R N. Heard, and G J Stewart An investigation of polymorphisms in the 4q13.3-21.1 CXC chemokine gene cluster for association with multiple sclerosis in Australians Multiple Sclerosis, November 1, 2006; 12(6): 710 - 722. [Abstract] [PDF]
|
|
|
|
|
|
Y. Li, A. Grupe, C. Rowland, P. Nowotny, J. S.K. Kauwe, S. Smemo, A. Hinrichs, K. Tacey, T. A. Toombs, S. Kwok, et al. DAPK1 variants are associated with Alzheimer's disease and allele-specific expression Hum. Mol. Genet., September 1, 2006; 15(17): 2560 - 2568. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 Y. Fukui, N. Hizawa, D. Takahashi, Y. Maeda, E. Jinushi, S. Konno, and M. Nishimura Association Between Nonspecific Airway Hyperresponsiveness and Arg16Gly {beta}2-Adrenergic Receptor Gene Polymorphism in Asymptomatic Healthy Japanese Subjects. Chest, August 1, 2006; 130(2): 449 - 454. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
R. L. Prentice and L. QI Aspects of the design and analysis of high-dimensional SNP studies for disease risk estimation Biostat., July 1, 2006; 7(3): 339 - 354. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
D. Shiffman, C. M. Rowland, J. Z. Louie, M. M. Luke, L. A. Bare, J. I. Bolonick, B. A. Young, J. J. Catanese, C. F. Stiggins, C. R. Pullinger, et al. Gene Variants of VAMP8 and HNRPUL1 Are Associated With Early-Onset Myocardial Infarction Arterioscler. Thromb. Vasc. Biol., July 1, 2006; 26(7): 1613 - 1618. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
C. S. Carlson, J. D. Smith, I. B. Stanaway, M. J. Rieder, and D. A. Nickerson Direct detection of null alleles in SNP genotyping data Hum. Mol. Genet., June 15, 2006; 15(12): 1931 - 1937. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 V. H. Brophy, S. K. Ro, B. K. Rhees, L.-Y. Lui, J. M. Lee, N. Umblas, L. G. Bentley, J. Li, S. Cheng, W. S. Browner, et al. Association of Phosphodiesterase 4D Polymorphisms With Ischemic Stroke in a US Population Stratified by Hypertension Status Stroke, June 1, 2006; 37(6): 1385 - 1390. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
J. Li, F. Wang, H. Mamon, M. H. Kulke, L. Harris, E. Maher, L. Wang, and G. M. Makrigiorgos Antiprimer Quenching-Based Real-Time PCR and Its Application to the Analysis of Clinical Cancer Samples Clin. Chem., April 1, 2006; 52(4): 624 - 633. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 P.V. K. Pant, H. Tao, E. J. Beilharz, D. G. Ballinger, D. R. Cox, and K. A. Frazer Analysis of allelic differential expression in human white blood cells Genome Res., March 1, 2006; 16(3): 331 - 339. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 D. N. Cook, G. S. Whitehead, L. H. Burch, K. G. Berman, Z. Kapadia, C. Wohlford-Lenane, and D. A. Schwartz Spontaneous Mutations in Recombinant Inbred Mice: Mutant Toll-like Receptor 4 (Tlr4) in BXD29 Mice Genetics, March 1, 2006; 172(3): 1751 - 1755. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 X Liu, H Li, W Qin, G He, D Li, Y Shen, J Shen, N Gu, G Feng, and L He Association of TPH1 with suicidal behaviour and psychiatric disorders in the Chinese population J. Med. Genet., February 1, 2006; 43(2): e04 - e04. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
K. Ranade, T. G. Kirchgessner, O. A. Iakoubova, J. J. Devlin, T. DelMonte, P. Vishnupad, L. Hui, Z. Tsuchihashi, F. M. Sacks, M. S. Sabatine, et al. Evaluation of the Paraoxonases as Candidate Genes for Stroke: Gln192Arg Polymorphism in the Paraoxonase 1 Gene Is Associated With Increased Risk of Stroke Stroke, November 1, 2005; 36(11): 2346 - 2350. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 J. Brohede, R. Dunne, J. D. McKay, and G. N. Hannan PPC: an algorithm for accurate estimation of SNP allele frequencies in small equimolar pools of DNA using data from high density microarrays Nucleic Acids Res., September 30, 2005; 33(17): e142 - e142. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
Q.-R. Liu, T. Drgon, D. Walther, C. Johnson, O. Poleskaya, J. Hess, and G. R. Uhl Pooled association genome scanning: Validation and use to identify addiction vulnerability loci in two samples PNAS, August 16, 2005; 102(33): 11864 - 11869. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 M. J. Moser, M. Ruckstuhl, C. A. Larsen, A. J. Swearingen, M. Kozlowski, L. Bassit, P. L. Sharma, R. F. Schinazi, and J. R. Prudent Quantifying Mixed Populations of Drug-Resistant Human Immunodeficiency Virus Type 1 Antimicrob. Agents Chemother., August 1, 2005; 49(8): 3334 - 3340. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
L. M. Butcher, E. Meaburn, J. Knight, P. C. Sham, L. C. Schalkwyk, I. W. Craig, and R. Plomin SNPs, microarrays and pooled DNA: identification of four loci associated with mild mental impairment in a sample of 6000 children Hum. Mol. Genet., May 15, 2005; 14(10): 1315 - 1325. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 J. Chen, W. Chan, S. Wallenstein, G. Berkowitz, and J. G. Wetmur Haplotype-Phenotype Relationships of Paraoxonase-1 Cancer Epidemiol. Biomarkers Prev., March 1, 2005; 14(3): 731 - 734. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
C. L. Simpson, J. Knight, L. M. Butcher, V. K. Hansen, E. Meaburn, L. C. Schalkwyk, I. W. Craig, J. F. Powell, P. C. Sham, and A. Al-Chalabi A central resource for accurate allele frequency estimation from pooled DNA genotyped on DNA microarrays Nucleic Acids Res., February 8, 2005; 33(3): e25 - e25. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
D. S. Hammond, J. M. Schooneveldt, G. R. Nimmo, F. Huygens, and P. M. Giffard blaSHV Genes in Klebsiella pneumoniae: Different Allele Distributions Are Associated with Different Promoters within Individual Isolates Antimicrob. Agents Chemother., January 1, 2005; 49(1): 256 - 263. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
Y. Li, P. Nowotny, P. Holmans, S. Smemo, J. S. K. Kauwe, A. L. Hinrichs, K. Tacey, L. Doil, R. van Luchene, V. Garcia, et al. Association of late-onset Alzheimer's disease with genetic variation in multiple members of the GAPD gene family PNAS, November 2, 2004; 101(44): 15688 - 15693. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
T-W Guo, F-C Zhang, M-S Yang, X-C Gao, L Bian, S-W Duan, Z-J Zheng, J-J Gao, H Wang, R-L Li, et al. Positive association of the DIO2 (deiodinase type 2) gene with mental retardation in the iodine-deficient areas of China J. Med. Genet., August 1, 2004; 41(8): 585 - 590. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
L. Zhou, A. N. Myers, J. G. Vandersteen, L. Wang, and C. T. Wittwer Closed-Tube Genotyping with Unlabeled Oligonucleotide Probes and a Saturating DNA Dye Clin. Chem., August 1, 2004; 50(8): 1328 - 1335. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
M. Liew, R. Pryor, R. Palais, C. Meadows, M. Erali, E. Lyon, and C. Wittwer Genotyping of Single-Nucleotide Polymorphisms by High-Resolution Melting of Small Amplicons Clin. Chem., July 1, 2004; 50(7): 1156 - 1164. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
S. Rollinson, J. M. Allan, G. R. Law, P. L. Roddam, M. T. Smith, C. Skibola, A. G. Smith, M. S. Forrest, K. Sibley, R. Higuchi, et al. High-Throughput Association Testing on DNA Pools to Identify Genetic Variants that Confer Susceptibility to Acute Myeloid Leukemia Cancer Epidemiol. Biomarkers Prev., May 1, 2004; 13(5): 795 - 800. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 F. Huygens, A. J. Stephens, G. R. Nimmo, and P. M. Giffard mecA Locus Diversity in Methicillin-Resistant Staphylococcus aureus Isolates in Brisbane, Australia, and the Development of a Novel Diagnostic Procedure for the Western Samoan Phage Pattern Clone J. Clin. Microbiol., May 1, 2004; 42(5): 1947 - 1955. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 N. Hizawa, E. Yamaguchi, D. Takahashi, J. Nishihira, and M. Nishimura Functional Polymorphisms in the Promoter Region of Macrophage Migration Inhibitory Factor and Atopy Am. J. Respir. Crit. Care Med., May 1, 2004; 169(9): 1014 - 1018. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
B. Ren, J.-M. Zhou, and M. Komiyama Straightforward detection of SNPs in double-stranded DNA by using exonuclease III/nuclease S1/PNA system Nucleic Acids Res., February 24, 2004; 32(4): e42 - e42. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
G. Schwarz, S. Baumler, A. Block, F. G. Felsenstein, and G. Wenzel Determination of detection and quantification limits for SNP allele frequency estimation in DNA pools using real time PCR Nucleic Acids Res., February 11, 2004; 32(3): e24 - e24. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
I. Lee, A. A. Dombkowski, and B. D. Athey Guidelines for incorporating non-perfectly matched oligonucleotides into target-specific hybridization probes for a DNA microarray Nucleic Acids Res., February 2, 2004; 32(2): 681 - 690. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 G. A. Robertson, V. Thiruvenkataswamy, H. Shilling, E. P. Price, F. Huygens, F. A. Henskens, and P. M. Giffard Identification and interrogation of highly informative single nucleotide polymorphism sets defined by bacterial multilocus sequence typing databases J. Med. Microbiol., January 1, 2004; 53(1): 35 - 45. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
K. Rudi and A. L. Holck Real-time closed tube single nucleotide polymorphism (SNP) quantification in pooled samples by quencher extension (QEXT) Nucleic Acids Res., October 1, 2003; 31(19): e117 - e117. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 R. K. Dasgupta, P. J. Adamson, F. E. Davies, S. Rollinson, P. L. Roddam, A. J. Ashcroft, A. M. Dring, J. A. L. Fenton, J. A. Child, J. M. Allan, et al. Polymorphic variation in GSTP1 modulates outcome following therapy for multiple myeloma Blood, October 1, 2003; 102(7): 2345 - 2350. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 K. Sibley, S. Rollinson, J. M. Allan, A. G. Smith, G. R. Law, P. L. Roddam, C. F. Skibola, M. T. Smith, and G. J. Morgan Functional FAS Promoter Polymorphisms Are Associated with Increased Risk of Acute Myeloid Leukemia Cancer Res., August 1, 2003; 63(15): 4327 - 4330. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
M. Xiao and P.-Y. Kwok DNA Analysis by Fluorescence Quenching Detection Genome Res., May 1, 2003; 13(5): 932 - 939. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 K. Sotlar, L. Escribano, O. Landt, S. Mohrle, S. Herrero, A. Torrelo, U. Lass, H.-P. Horny, and B. Bultmann One-Step Detection of c-kit Point Mutations Using Peptide Nucleic Acid-Mediated Polymerase Chain Reaction Clamping and Hybridization Probes Am. J. Pathol., March 1, 2003; 162(3): 737 - 746. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
R. G. Blazej, B. M. Paegel, and R. A. Mathies Polymorphism Ratio Sequencing: A New Approach for Single Nucleotide Polymorphism Discovery and Genotyping Genome Res., February 1, 2003; 13(2): 287 - 293. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
K. L. Mohlke, M. R. Erdos, L. J. Scott, T. E. Fingerlin, A. U. Jackson, K. Silander, P. Hollstein, M. Boehnke, and F. S. Collins High-throughput screening for evidence of association by using mass spectrometry genotyping on DNA pools PNAS, December 24, 2002; 99(26): 16928 - 16933. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
I. Tiemann-Boege, W. Navidi, R. Grewal, D. Cohn, B. Eskenazi, A. J. Wyrobek, and N. Arnheim The observed human sperm mutation frequency cannot explain the achondroplasia paternal age effect PNAS, November 12, 2002; 99(23): 14952 - 14957. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
N. Hizawa, E. Yamaguchi, S. Konno, Y. Tanino, E. Jinushi, and M. Nishimura A Functional Polymorphism in the RANTES Gene Promoter Is Associated with the Development of Late-Onset Asthma Am. J. Respir. Crit. Care Med., September 1, 2002; 166(5): 686 - 690. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
K. Xu, R. H. Lipsky, W. Mangal, E. Ferro, and D. Goldman Single-Nucleotide Polymorphism Allele Frequencies Determined by Quantitative Kinetic Assay of Pooled DNA Clin. Chem., September 1, 2002; 48(9): 1605 - 1608. [Full Text] [PDF]
|
|
|
|
|
|
S. Le Hellard, S. J. Ballereau, P. M. Visscher, H. S. Torrance, J. Pinson, S. W. Morris, M. L. Thomson, C. A. M. Semple, W. J. Muir, D. H. R. Blackwood, et al. SNP genotyping on pooled DNAs: comparison of genotyping technologies and a semi automated method for data storage and analysis Nucleic Acids Res., August 1, 2002; 30(15): e74 - e74. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
E. Inbar, B. Yakir, and A. Darvasi An efficient haplotyping method with DNA pools Nucleic Acids Res., August 1, 2002; 30(15): e76 - e76. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
Y. Eitan and Y. Kashi Direct micro-haplotyping by multiple double PCR amplifications of specific alleles (MD-PASA) Nucleic Acids Res., June 15, 2002; 30(12): e62 - e62. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
J. Chen, S. Germer, R. Higuchi, G. Berkowitz, J. Godbold, and J. G. Wetmur Kinetic Polymerase Chain Reaction on Pooled DNA: A High-Throughput, High-Efficiency Alternative in Genetic Epidemiological Studies Cancer Epidemiol. Biomarkers Prev., January 1, 2002; 11(1): 131 - 136. [Abstract] [Full Text] |
