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Published online before print
November 21, 2000, 10.1101/gr.GR-1529R December 1, 2000 Genome Research, DOI: 10.1101/gr.GR-1529R
Vol. 10, Issue 12, 2044-2054, December 2000
METHODS
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  S. Augui, G. J. Filion, S. Huart, E. Nora, M. Guggiari, M. Maresca, A. F. Stewart, and E. Heard Sensing X Chromosome Pairs Before X Inactivation via a Novel X-Pairing Region of the Xic Science, December 7, 2007; 318(5856): 1632 - 1636. [Abstract] [Full Text] [PDF]
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 L. C. O. Lazzarini, R. C. Huard, N. L. Boechat, H. M. Gomes, M. C. Oelemann, N. Kurepina, E. Shashkina, F. C. Q. Mello, A. L. Gibson, M. J. Virginio, et al. Discovery of a Novel Mycobacterium tuberculosis Lineage That Is a Major Cause of Tuberculosis in Rio de Janeiro, Brazil J. Clin. Microbiol., December 1, 2007; 45(12): 3891 - 3902. [Abstract] [Full Text] [PDF]
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 M. Attia, C. Rachez, A. De Pauw, P. Avner, and U. C. Rogner Nap1l2 Promotes Histone Acetylation Activity during Neuronal Differentiation Mol. Cell. Biol., September 1, 2007; 27(17): 6093 - 6102. [Abstract] [Full Text] [PDF]
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 J. C. Chow, L. L. Hall, S. E. L. Baldry, N. P. Thorogood, J. B. Lawrence, and C. J. Brown Inducible XIST-dependent X-chromosome inactivation in human somatic cells is reversible PNAS, June 12, 2007; 104(24): 10104 - 10109. [Abstract] [Full Text] [PDF]
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 M. B. Gerstein, C. Bruce, J. S. Rozowsky, D. Zheng, J. Du, J. O. Korbel, O. Emanuelsson, Z. D. Zhang, S. Weissman, and M. Snyder What is a gene, post-ENCODE? History and updated definition Genome Res., June 1, 2007; 17(6): 669 - 681. [Abstract] [Full Text] [PDF]
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 J. S. Mattick A new paradigm for developmental biology J. Exp. Biol., May 1, 2007; 210(9): 1526 - 1547. [Abstract] [Full Text] [PDF]
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 K. V. Prasanth and D. L. Spector Eukaryotic regulatory RNAs: an answer to the 'genome complexity' conundrum Genes & Dev., January 1, 2007; 21(1): 11 - 42. [Abstract] [Full Text] [PDF]
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E. Heard and C. M. Disteche Dosage compensation in mammals: fine-tuning the expression of the X chromosome Genes & Dev., July 15, 2006; 20(14): 1848 - 1867. [Abstract] [Full Text] [PDF]
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L. Duret, C. Chureau, S. Samain, J. Weissenbach, and P. Avner The xist RNA gene evolved in eutherians by pseudogenization of a protein-coding gene. Science, June 16, 2006; 312(5780): 1653 - 1655. [Abstract] [Full Text] [PDF]
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 R. C. Huard, M. Fabre, P. de Haas, L. Claudio Oliveira Lazzarini, D. van Soolingen, D. Cousins, and J. L. Ho Novel Genetic Polymorphisms That Further Delineate the Phylogeny of the Mycobacterium tuberculosis Complex. J. Bacteriol., June 1, 2006; 188(12): 4271 - 4287. [Abstract] [Full Text] [PDF]
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R. K. Rowntree and J. T. Lee Mapping of DNA Replication Origins to Noncoding Genes of the X-Inactivation Center Mol. Cell. Biol., May 15, 2006; 26(10): 3707 - 3717. [Abstract] [Full Text] [PDF]
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 J. S. Mattick and I. V. Makunin Non-coding RNA. Hum. Mol. Genet., April 15, 2006; 15(suppl_1): R17 - R29. [Abstract] [Full Text] [PDF]
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J. A. McNeil, K. P. Smith, L. L. Hall, and J. B. Lawrence Word frequency analysis reveals enrichment of dinucleotide repeats on the human X chromosome and [GATA]n in the X escape region Genome Res., April 1, 2006; 16(4): 477 - 484. [Abstract] [Full Text] [PDF]
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C. Simons, M. Pheasant, I. V. Makunin, and J. S. Mattick Transposon-free regions in mammalian genomes Genome Res., February 1, 2006; 16(2): 164 - 172. [Abstract] [Full Text] [PDF]
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 F. Goes da Silva, A. Iandolino, F. Al-Kayal, M. C. Bohlmann, M. A. Cushman, H. Lim, A. Ergul, R. Figueroa, E. K. Kabuloglu, C. Osborne, et al. Characterizing the Grape Transcriptome. Analysis of Expressed Sequence Tags from Multiple Vitis Species and Development of a Compendium of Gene Expression during Berry Development Plant Physiology, October 1, 2005; 139(2): 574 - 597. [Abstract] [Full Text] [PDF]
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S. Mostowy, J. Inwald, S. Gordon, C. Martin, R. Warren, K. Kremer, D. Cousins, and M. A. Behr Revisiting the Evolution of Mycobacterium bovis J. Bacteriol., September 15, 2005; 187(18): 6386 - 6395. [Abstract] [Full Text] [PDF]
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J. S. Mattick The Functional Genomics of Noncoding RNA Science, September 2, 2005; 309(5740): 1527 - 1528. [Abstract] [Full Text] [PDF]
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J. S. Mattick and I. V. Makunin Small regulatory RNAs in mammals Hum. Mol. Genet., April 15, 2005; 14(suppl_1): R121 - R132. [Abstract] [Full Text] [PDF]
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E. M. Pugacheva, V. K. Tiwari, Z. Abdullaev, A. A. Vostrov, P. T. Flanagan, W. W. Quitschke, D. I. Loukinov, R. Ohlsson, and V. V. Lobanenkov Familial cases of point mutations in the XIST promoter reveal a correlation between CTCF binding and pre-emptive choices of X chromosome inactivation Hum. Mol. Genet., April 1, 2005; 14(7): 953 - 965. [Abstract] [Full Text] [PDF]
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 J. Gribnau, S. Luikenhuis, K. Hochedlinger, K. Monkhorst, and R. Jaenisch X chromosome choice occurs independently of asynchronous replication timing J. Cell Biol., January 31, 2005; 168(3): 365 - 373. [Abstract] [Full Text] [PDF]
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 S. L. Hiley, J. Jackman, T. Babak, M. Trochesset, Q. D. Morris, E. Phizicky, and T. R. Hughes Detection and discovery of RNA modifications using microarrays Nucleic Acids Res., January 7, 2005; 33(1): e2 - e2. [Abstract] [Full Text] [PDF]
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J. Wakai, A. Takagi, M. Nakayama, T. Miya, T. Miyahara, T. Iwanaga, S. Takenaka, Y. Ikeda, and M. Amano A novel method of identifying genetic mutations using an electrochemical DNA array Nucleic Acids Res., October 21, 2004; 32(18): e141 - e141. [Abstract] [Full Text] [PDF]
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S. Mostowy, A. Onipede, S. Gagneux, S. Niemann, K. Kremer, E. P. Desmond, M. Kato-Maeda, and M. Behr Genomic Analysis Distinguishes Mycobacterium africanum J. Clin. Microbiol., August 1, 2004; 42(8): 3594 - 3599. [Abstract] [Full Text] [PDF]
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Y.-O. L. Goguet de la Salmoniere, C. C. Kim, A. G. Tsolaki, A. S. Pym, M. S. Siegrist, and P. M. Small High-Throughput Method for Detecting Genomic-Deletion Polymorphisms J. Clin. Microbiol., July 1, 2004; 42(7): 2913 - 2918. [Abstract] [Full Text] [PDF]
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K. D. Tsuchiya, J. M. Greally, Y. Yi, K. P. Noel, J.-P. Truong, and C. M. Disteche Comparative Sequence and X-Inactivation Analyses of a Domain of Escape in Human Xp11.2 and the Conserved Segment in Mouse Genome Res., July 1, 2004; 14(7): 1275 - 1284. [Abstract] [Full Text] [PDF]
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D. Nguyen, P. Brassard, D. Menzies, L. Thibert, R. Warren, S. Mostowy, and M. Behr Genomic Characterization of an Endemic Mycobacterium tuberculosis Strain: Evolutionary and Epidemiologic Implications J. Clin. Microbiol., June 1, 2004; 42(6): 2573 - 2580. [Abstract] [Full Text] [PDF]
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K. Rajakumar, J. Shafi, R. J. Smith, R. A. Stabler, P. W. Andrew, D. Modha, G. Bryant, P. Monk, J. Hinds, P. D. Butcher, et al. Use of Genome Level-Informed PCR as a New Investigational Approach for Analysis of Outbreak-Associated Mycobacterium tuberculosis Isolates J. Clin. Microbiol., May 1, 2004; 42(5): 1890 - 1896. [Abstract] [Full Text] [PDF]
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X. S. Puente and C. Lopez-Otin A Genomic Analysis of Rat Proteases and Protease Inhibitors Genome Res., April 1, 2004; 14(4): 609 - 622. [Abstract] [Full Text] [PDF]
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K. A. Frazer, H. Tao, K. Osoegawa, P. J. de Jong, X. Chen, M. F. Doherty, and D. R. Cox Noncoding Sequences Conserved in a Limited Number of Mammals in the SIM2 Interval are Frequently Functional Genome Res., March 1, 2004; 14(3): 367 - 372. [Abstract] [Full Text] [PDF]
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S. Mostowy, D. Cousins, and M. A. Behr Genomic Interrogation of the Dassie Bacillus Reveals It as a Unique RD1 Mutant within the Mycobacterium tuberculosis Complex J. Bacteriol., January 1, 2004; 186(1): 104 - 109. [Abstract] [Full Text] [PDF]
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 B. Cardazzo, L. Bargelloni, L. Toffolatti, and T. Patarnello Intervening Sequences in Paralogous Genes: A Comparative Genomic Approach to Study the Evolution of X Chromosome Introns Mol. Biol. Evol., December 1, 2003; 20(12): 2034 - 2041. [Abstract] [Full Text] [PDF]
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T. B. Nesterova, C. M. Johnston, R. Appanah, A. E.T. Newall, J. Godwin, M. Alexiou, and N. Brockdorff Skewing X chromosome choice by modulating sense transcription across the Xist locus Genes & Dev., September 1, 2003; 17(17): 2177 - 2190. [Abstract] [Full Text] [PDF]
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J. Inwald, J. Hinds, S. Palmer, J. Dale, P. D. Butcher, R. G. Hewinson, and S. V. Gordon Genomic Analysis of Mycobacterium tuberculosis Complex Strains Used for Production of Purified Protein Derivative J. Clin. Microbiol., August 1, 2003; 41(8): 3929 - 3932. [Abstract] [Full Text] [PDF]
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J. O. Borevitz, D. Liang, D. Plouffe, H.-S. Chang, T. Zhu, D. Weigel, C. C. Berry, E. Winzeler, and J. Chory Large-Scale Identification of Single-Feature Polymorphisms in Complex Genomes Genome Res., March 1, 2003; 13(3): 513 - 523. [Abstract] [Full Text] [PDF]
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 P. Brodin, K. Eiglmeier, M. Marmiesse, A. Billault, T. Garnier, S. Niemann, S. T. Cole, and R. Brosch Bacterial Artificial Chromosome-Based Comparative Genomic Analysis Identifies Mycobacterium microti as a Natural ESAT-6 Deletion Mutant Infect. Immun., October 1, 2002; 70(10): 5568 - 5578. [Abstract] [Full Text] [PDF]
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 S. T. Cole Comparative and functional genomics of the Mycobacterium tuberculosis complex Microbiology, October 1, 2002; 148(10): 2919 - 2928. [Full Text] [PDF]
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R. A. McAdam, S. Quan, D. A. Smith, S. Bardarov, J. C. Betts, F. C. Cook, E. U. Hooker, A. P. Lewis, P. Woollard, M. J. Everett, et al. Characterization of a Mycobacterium tuberculosis H37Rv transposon library reveals insertions in 351 ORFs and mutants with altered virulence Microbiology, October 1, 2002; 148(10): 2975 - 2986. [Abstract] [Full Text] [PDF]
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 M.V. Burgos and A.S. Pym Molecular epidemiology of tuberculosis Eur. Respir. J., July 1, 2002; 20(36_suppl): 54S - 65s. [Abstract] [Full Text] [PDF]
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S.T. Cole Comparative mycobacterial genomics as a tool for drug target and antigen discovery Eur. Respir. J., July 1, 2002; 20(36_suppl): 78S - 86s. [Abstract] [Full Text] [PDF]
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 W. Bishai Tuberculosis Transmission-Rogue Pathogen or Rogue Patient? Am. J. Respir. Crit. Care Med., October 1, 2001; 164(7): 1104 - 1105. [Full Text] [PDF]
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M. Kato-Maeda, J. T. Rhee, T. R. Gingeras, H. Salamon, J. Drenkow, N. Smittipat, and P. M. Small Comparing Genomes within the Species Mycobacterium tuberculosis Genome Res., April 1, 2001; 11(4): 547 - 554. [Abstract] [Full Text]
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A. S. Pym and R. Brosch Tools for the Population Genomics of the Tubercle Bacilli Genome Res., December 1, 2000; 10(12): 1837 - 1839. [Full Text]
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D. J. Cutler, M. E. Zwick, M. M. Carrasquillo, C. T. Yohn, K. P. Tobin, C. Kashuk, D. J. Mathews, N. A. Shah, E. E. Eichler, J. A. Warrington, et al. High-Throughput Variation Detection and Genotyping Using Microarrays Genome Res., November 1, 2001; 11(11): 1913 - 1925. [Abstract] [Full Text] [PDF]
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