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Published online before print
November 8, 2000, 10.1101/gr.GR-1375R
Vol. 10, Issue 11, 1772-1787, November 2000
METHODS
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  P. Gayral, J.-C. Noa-Carrazana, M. Lescot, F. Lheureux, B. E. L. Lockhart, T. Matsumoto, P. Piffanelli, and M.-L. Iskra-Caruana A Single Banana Streak Virus Integration Event in the Banana Genome as the Origin of Infectious Endogenous Pararetrovirus J. Virol., July 1, 2008; 82(13): 6697 - 6710. [Abstract] [Full Text] [PDF]
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 M. Troggio, S. Vezzulli, M. Pindo, G. Malacarne, P. Fontana, F. M. Moreira, L. Costantini, M. S. Grando, R. Viola, and R. Velasco ASEV Honorary Research Lecture 2007: Beyond the Genome, Opportunities for a Modern Viticulture: A Research Overview Am. J. Enol. Vitic., June 1, 2008; 59(2): 117 - 127. [Abstract] [Full Text] [PDF]
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 P. Abbal, M. Pradal, F.-X. Sauvage, P. Chatelet, S. Paillard, A. Canaguier, A.-F. Adam-Blondon, and C. Tesniere Molecular characterization and expression analysis of the Rop GTPase family in Vitis vinifera J. Exp. Bot., July 1, 2007; 58(10): 2641 - 2652. [Abstract] [Full Text] [PDF]
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 H. Kim, P. S. Miguel, W. Nelson, K. Collura, M. Wissotski, J. G. Walling, J. P. Kim, S. A. Jackson, C. Soderlund, and R. A. Wing Comparative Physical Mapping Between Oryza sativa (AA Genome Type) and O. punctata (BB Genome Type) Genetics, May 1, 2007; 176(1): 379 - 390. [Abstract] [Full Text] [PDF]
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 M. Xiao, A. Phong, C. Ha, T.-F. Chan, D. Cai, L. Leung, E. Wan, A. L. Kistler, J. L. DeRisi, P. R. Selvin, et al. Rapid DNA mapping by fluorescent single molecule detection Nucleic Acids Res., February 16, 2007; 35(3): e16 - e16. [Abstract] [Full Text] [PDF]
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 F. M. You, M.-C. Luo, Y. Q. Gu, G. R. Lazo, K. Deal, J. Dvorak, and O. D. Anderson GenoProfiler: batch processing of high-throughput capillary fingerprinting data Bioinformatics, January 15, 2007; 23(2): 240 - 242. [Abstract] [Full Text] [PDF]
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C. Soderlund, W. Nelson, A. Shoemaker, and A. Paterson SyMAP: A system for discovering and viewing syntenic regions of FPC maps. Genome Res., September 1, 2006; 16(9): 1159 - 1168. [Abstract] [Full Text] [PDF]
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R. L. Warren, D. Varabei, D. Platt, X. Huang, D. Messina, S.-P. Yang, J. W. Kronstad, M. Krzywinski, W. C. Warren, J. W. Wallis, et al. Physical map-assisted whole-genome shotgun sequence assemblies. Genome Res., June 1, 2006; 16(6): 768 - 775. [Abstract] [Full Text] [PDF]
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 S. A. Peters, J. C. van Haarst, T. P. Jesse, D. Woltinge, K. Jansen, T. Hesselink, M. J. van Staveren, M. H.C. Abma-Henkens, and R. M. Klein-Lankhorst TOPAAS, a Tomato and Potato Assembly Assistance System for Selection and Finishing of Bacterial Artificial Chromosomes Plant Physiology, March 1, 2006; 140(3): 805 - 817. [Abstract] [Full Text] [PDF]
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J. S.S. Ammiraju, M. Luo, J. L. Goicoechea, W. Wang, D. Kudrna, C. Mueller, J. Talag, H. Kim, N. B. Sisneros, B. Blackmon, et al. The Oryza bacterial artificial chromosome library resource: Construction and analysis of 12 deep-coverage large-insert BAC libraries that represent the 10 genome types of the genus Oryza Genome Res., January 1, 2006; 16(1): 140 - 147. [Abstract] [Full Text] [PDF]
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 H. Mizuno, K. Ito, J. Wu, T. Tanaka, H. Kanamori, Y. Katayose, T. Sasaki, and T. Matsumoto Identification and Mapping of Expressed Genes, Simple Sequence Repeats and Transposable Elements in Centromeric Regions of Rice Chromosomes DNA Res, January 1, 2006; 13(6): 267 - 274. [Abstract] [Full Text] [PDF]
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 I. Vroh Bi, M. D. McMullen, H. Sanchez-Villeda, S. Schroeder, J. Gardiner, M. Polacco, C. Soderlund, R. Wing, Z. Fang, and E. H. Coe Jr. Single Nucleotide Polymorphisms and Insertion-Deletions for Genetic Markers and Anchoring the Maize Fingerprint Contig Physical Map Crop Sci., December 2, 2005; 46(1): 12 - 21. [Abstract] [Full Text] [PDF]
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 J. E. Bowers, M. A. Arias, R. Asher, J. A. Avise, R. T. Ball, G. A. Brewer, R. W. Buss, A. H. Chen, T. M. Edwards, J. C. Estill, et al. Comparative physical mapping links conservation of microsynteny to chromosome structure and recombination in grasses PNAS, September 13, 2005; 102(37): 13206 - 13211. [Abstract] [Full Text] [PDF]
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W. M. Nelson, A. K. Bharti, E. Butler, F. Wei, G. Fuks, H. Kim, R. A. Wing, J. Messing, and C. Soderlund Whole-Genome Validation of High-Information-Content Fingerprinting Plant Physiology, September 1, 2005; 139(1): 27 - 38. [Abstract] [Full Text] [PDF]
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J. Gonzalez, M. Nefedov, I. Bosdet, F. Casals, O. Calvete, A. Delprat, H. Shin, R. Chiu, C. Mathewson, N. Wye, et al. A BAC-based physical map of the Drosophila buzzatii genome Genome Res., June 1, 2005; 15(6): 885 - 892. [Abstract] [Full Text] [PDF]
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S. B. Cannon, J. A. Crow, M. L. Heuer, X. Wang, E. K.S. Cannon, C. Dwan, A.-F. Lamblin, J. Vasdewani, J. Mudge, A. Cook, et al. Databases and Information Integration for the Medicago truncatula Genome and Transcriptome Plant Physiology, May 1, 2005; 138(1): 38 - 46. [Abstract] [Full Text] [PDF]
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V. Pampanwar, F. Engler, J. Hatfield, S. Blundy, G. Gupta, and C. Soderlund FPC Web Tools for Rice, Maize, and Distribution Plant Physiology, May 1, 2005; 138(1): 116 - 126. [Abstract] [Full Text] [PDF]
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Z. Xu, M. A. van den Berg, C. Scheuring, L. Covaleda, H. Lu, F. A. Santos, T. Uhm, M.-K. Lee, C. Wu, S. Liu, et al. Genome physical mapping from large-insert clones by fingerprint analysis with capillary electrophoresis: a robust physical map of Penicillium chrysogenum Nucleic Acids Res., March 14, 2005; 33(5): e50 - e50. [Abstract] [Full Text] [PDF]
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J. C. Schimenti, J. L. Reynolds, and A. Planchart Mutations in Serac1 or Synj2 cause proximal t haplotype-mediated male mouse sterility but not transmission ratio distortion PNAS, March 1, 2005; 102(9): 3342 - 3347. [Abstract] [Full Text] [PDF]
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A. Milosavljevic, R. A. Harris, E. J. Sodergren, A. R. Jackson, K. J. Kalafus, A. Hodgson, A. Cree, W. Dai, M. Csuros, B. Zhu, et al. Pooled genomic indexing of rhesus macaque Genome Res., February 1, 2005; 15(2): 292 - 301. [Abstract] [Full Text] [PDF]
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 B. Scherrer, E. Isidore, P. Klein, J.-s. Kim, A. Bellec, B. Chalhoub, B. Keller, and C. Feuillet Large Intraspecific Haplotype Variability at the Rph7 Locus Results from Rapid and Recent Divergence in the Barley Genome PLANT CELL, February 1, 2005; 17(2): 361 - 374. [Abstract] [Full Text] [PDF]
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S. Brunner, K. Fengler, M. Morgante, S. Tingey, and A. Rafalski Evolution of DNA Sequence Nonhomologies among Maize Inbreds PLANT CELL, February 1, 2005; 17(2): 343 - 360. [Abstract] [Full Text] [PDF]
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W. A. Kellner, R. T. Sullivan, B. H. Carlson, NISC Comparative Sequencing Program, and J. W. Thomas Uprobe: A genome-wide universal probe resource for comparative physical mapping in vertebrates Genome Res., January 1, 2005; 15(1): 166 - 173. [Abstract] [Full Text] [PDF]
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A.-M. Mallon, L. Wilming, J. Weekes, J. G.R. Gilbert, J. Ashurst, S. Peyrefitte, L. Matthews, M. Cadman, R. McKeone, C. A. Sellick, et al. Organization and Evolution of a Gene-Rich Region of the Mouse Genome: A 12.7-Mb Region Deleted in the Del(13)Svea36H Mouse Genome Res., October 1, 2004; 14(10a): 1888 - 1901. [Abstract] [Full Text] [PDF]
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V. Magrini, W. C. Warren, J. Wallis, W. E. Goldman, J. Xu, E. R. Mardis, and J. D. McPherson Fosmid-Based Physical Mapping of the Histoplasma capsulatum Genome Genome Res., August 1, 2004; 14(8): 1603 - 1609. [Abstract] [Full Text] [PDF]
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M. Krzywinski, I. Bosdet, D. Smailus, R. Chiu, C. Mathewson, N. Wye, S. Barber, M. Brown-John, S. Chan, S. Chand, et al. A set of BAC clones spanning the human genome Nucleic Acids Res., July 9, 2004; 32(12): 3651 - 3660. [Abstract] [Full Text] [PDF]
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T. Raudsepp, A. Santani, B. Wallner, S. R. Kata, C. Ren, H.-B. Zhang, J. E. Womack, L. C. Skow, and B. P. Chowdhary A detailed physical map of the horse Y chromosome PNAS, June 22, 2004; 101(25): 9321 - 9326. [Abstract] [Full Text] [PDF]
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E. Y. Chan, N. M. Goncalves, R. A. Haeusler, A. J. Hatch, J. W. Larson, A. M. Maletta, G. R. Yantz, E. D. Carstea, M. Fuchs, G. G. Wong, et al. DNA Mapping Using Microfluidic Stretching and Single-Molecule Detection of Fluorescent Site-Specific Tags Genome Res., June 1, 2004; 14(6): 1137 - 1146. [Abstract] [Full Text] [PDF]
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C. A. Stewart, R. Horton, R. J.N. Allcock, J. L. Ashurst, A. M. Atrazhev, P. Coggill, I. Dunham, S. Forbes, K. Halls, J. M.M. Howson, et al. Complete MHC Haplotype Sequencing for Common Disease Gene Mapping Genome Res., June 1, 2004; 14(6): 1176 - 1187. [Abstract] [Full Text] [PDF]
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R. Chen, E. Sodergren, G. M. Weinstock, and R. A. Gibbs Dynamic Building of a BAC Clone Tiling Path for the Rat Genome Sequencing Project Genome Res., April 1, 2004; 14(4): 679 - 684. [Abstract] [Full Text] [PDF]
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M. Krzywinski, J. Wallis, C. Gosele, I. Bosdet, R. Chiu, T. Graves, O. Hummel, D. Layman, C. Mathewson, N. Wye, et al. Integrated and Sequence-Ordered BAC- and YAC-Based Physical Maps for the Rat Genome Genome Res., April 1, 2004; 14(4): 766 - 779. [Abstract] [Full Text] [PDF]
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C. Wu, S. Sun, P. Nimmakayala, F. A. Santos, K. Meksem, R. Springman, K. Ding, D. A. Lightfoot, and H.-B. Zhang A BAC- and BIBAC-Based Physical Map of the Soybean Genome Genome Res., February 1, 2004; 14(2): 319 - 326. [Abstract] [Full Text] [PDF]
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Y.-J. Chung, J. Jonkers, H. Kitson, H. Fiegler, S. Humphray, C. Scott, S. Hunt, Y. Yu, I. Nishijima, A. Velds, et al. A Whole-Genome Mouse BAC Microarray With 1-Mb Resolution for Analysis of DNA Copy Number Changes by Array Comparative Genomic Hybridization Genome Res., January 1, 2004; 14(1): 188 - 196. [Abstract] [Full Text] [PDF]
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C. J. Lawrence, Q. Dong, M. L. Polacco, T. E. Seigfried, and V. Brendel MaizeGDB, the community database for maize genetics and genomics Nucleic Acids Res., January 1, 2004; 32(90001): D393 - 397. [Abstract] [Full Text] [PDF]
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C. Ren, M.-K. Lee, B. Yan, K. Ding, B. Cox, M. N. Romanov, J. A. Price, J. B. Dodgson, and H.-B. Zhang A BAC-Based Physical Map of the Chicken Genome Genome Res., December 1, 2003; 13(12): 2754 - 2758. [Abstract] [Full Text] [PDF]
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F. W. Engler, J. Hatfield, W. Nelson, and C. A. Soderlund Locating Sequence on FPC Maps and Selecting a Minimal Tiling Path Genome Res., September 1, 2003; 13(9): 2152 - 2163. [Abstract] [Full Text] [PDF]
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K. A. VandenBosch and G. Stacey Summaries of Legume Genomics Projects from around the Globe. Community Resources for Crops and Models Plant Physiology, March 1, 2003; 131(3): 840 - 865. [Full Text] [PDF]
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V. L. Chandler and V. Brendel The Maize Genome Sequencing Project Plant Physiology, December 1, 2002; 130(4): 1594 - 1597. [Full Text] [PDF]
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K. C. Cone, M. D. McMullen, I. V. Bi, G. L. Davis, Y.-S. Yim, J. M. Gardiner, M. L. Polacco, H. Sanchez-Villeda, Z. Fang, S. G. Schroeder, et al. Genetic, Physical, and Informatics Resources for Maize. On the Road to an Integrated Map Plant Physiology, December 1, 2002; 130(4): 1598 - 1605. [Full Text] [PDF]
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Y.-S. Yim, G. L. Davis, N. A. Duru, T. A. Musket, E. W. Linton, J. W. Messing, M. D. McMullen, C. A. Soderlund, M. L. Polacco, J. M. Gardiner, et al. Characterization of Three Maize Bacterial Artificial Chromosome Libraries toward Anchoring of the Physical Map to the Genetic Map Using High-Density Bacterial Artificial Chromosome Filter Hybridization Plant Physiology, December 1, 2002; 130(4): 1686 - 1696. [Abstract] [Full Text] [PDF]
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J. W. Thomas, A. B. Prasad, T. J. Summers, S.-Q. Lee-Lin, V. V.B. Maduro, J. R. Idol, J. F. Ryan, P. J. Thomas, J. C. McDowell, and E. D. Green Parallel Construction of Orthologous Sequence-Ready Clone Contig Maps in Multiple Species Genome Res., August 1, 2002; 12(8): 1277 - 1285. [Abstract] [Full Text] [PDF]
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U. DeSilva, L. Elnitski, J. R. Idol, J. L. Doyle, W. Gan, J. W. Thomas, S. Schwartz, N. L. Dietrich, S. M. Beckstrom-Sternberg, J. C. McDowell, et al. Generation and Comparative Analysis of ~3.3 Mb of Mouse Genomic Sequence Orthologous to the Region of Human Chromosome 7q11.23 Implicated in Williams Syndrome Genome Res., January 1, 2002; 12(1): 3 - 15. [Abstract] [Full Text] [PDF]
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K. Osoegawa, A. G. Mammoser, C. Wu, E. Frengen, C. Zeng, J. J. Catanese, and P. J. de Jong A Bacterial Artificial Chromosome Library for Sequencing the Complete Human Genome Genome Res., March 1, 2001; 11(3): 483 - 496. [Abstract] [Full Text]
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