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Vol. 10, Issue 1, 129-136, January 2000
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  T. Hain, S. Otten, U. von Both, S. S. Chatterjee, U. Technow, A. Billion, R. Ghai, W. Mohamed, E. Domann, and T. Chakraborty Novel Bacterial Artificial Chromosome Vector pUvBBAC for Use in Studies of the Functional Genomics of Listeria spp. Appl. Envir. Microbiol., March 15, 2008; 74(6): 1892 - 1901. [Abstract] [Full Text] [PDF]
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 N. Galpaz, G. Ronen, Z. Khalfa, D. Zamir, and J. Hirschberg A Chromoplast-Specific Carotenoid Biosynthesis Pathway Is Revealed by Cloning of the Tomato white-flower Locus PLANT CELL, August 1, 2006; 18(8): 1947 - 1960. [Abstract] [Full Text] [PDF]
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 C. S. Barry and J. J. Giovannoni From The Cover: Ripening in the tomato Green-ripe mutant is inhibited by ectopic expression of a protein that disrupts ethylene signaling PNAS, May 16, 2006; 103(20): 7923 - 7928. [Abstract] [Full Text] [PDF]
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 Y. Wang, X. Tang, Z. Cheng, L. Mueller, J. Giovannoni, and S. D. Tanksley Euchromatin and Pericentromeric Heterochromatin: Comparative Composition in the Tomato Genome Genetics, April 1, 2006; 172(4): 2529 - 2540. [Abstract] [Full Text] [PDF]
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 S. A. Peters, J. C. van Haarst, T. P. Jesse, D. Woltinge, K. Jansen, T. Hesselink, M. J. van Staveren, M. H.C. Abma-Henkens, and R. M. Klein-Lankhorst TOPAAS, a Tomato and Potato Assembly Assistance System for Selection and Finishing of Bacterial Artificial Chromosomes Plant Physiology, March 1, 2006; 140(3): 805 - 817. [Abstract] [Full Text] [PDF]
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G. Tapia, I. Verdugo, M. Yanez, I. Ahumada, C. Theoduloz, C. Cordero, F. Poblete, E. Gonzalez, and S. Ruiz-Lara Involvement of Ethylene in Stress-Induced Expression of the TLC1.1 Retrotransposon from Lycopersicon chilense Dun. Plant Physiology, August 1, 2005; 138(4): 2075 - 2086. [Abstract] [Full Text] [PDF]
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R. Guyot, X. Cheng, Y. Su, Z. Cheng, E. Schlagenhauf, B. Keller, and H.-Q. Ling Complex Organization and Evolution of the Tomato Pericentromeric Region at the FER Gene Locus Plant Physiology, July 1, 2005; 138(3): 1205 - 1215. [Abstract] [Full Text] [PDF]
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L. A. Mueller, T. H. Solow, N. Taylor, B. Skwarecki, R. Buels, J. Binns, C. Lin, M. H. Wright, R. Ahrens, Y. Wang, et al. The SOL Genomics Network. A Comparative Resource for Solanaceae Biology and Beyond Plant Physiology, July 1, 2005; 138(3): 1310 - 1317. [Abstract] [Full Text] [PDF]
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 I. Ratnayaka, M. Baga, D. B. Fowler, and R. N. Chibbar Construction and Characterization of a BAC Library of a Cold-Tolerant Hexaploid Wheat Cultivar Crop Sci., June 24, 2005; 45(4): 1571 - 1577. [Abstract] [Full Text] [PDF]
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C. Li, A. L. Schilmiller, G. Liu, G. I. Lee, S. Jayanty, C. Sageman, J. Vrebalov, J. J. Giovannoni, K. Yagi, Y. Kobayashi, et al. Role of {beta}-Oxidation in Jasmonate Biosynthesis and Systemic Wound Signaling in Tomato PLANT CELL, March 1, 2005; 17(3): 971 - 986. [Abstract] [Full Text] [PDF]
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E. van der Knaap, A. Sanyal, S. A. Jackson, and S. D. Tanksley High-Resolution Fine Mapping and Fluorescence in Situ Hybridization Analysis of sun, a Locus Controlling Tomato Fruit Shape, Reveals a Region of the Tomato Genome Prone to DNA Rearrangements Genetics, December 1, 2004; 168(4): 2127 - 2140. [Abstract] [Full Text] [PDF]
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K.-Y. Chen and S. D. Tanksley High-Resolution Mapping and Functional Analysis of se2.1: A Major Stigma Exsertion Quantitative Trait Locus Associated With the Evolution From Allogamy to Autogamy in the Genus Lycopersicon Genetics, November 1, 2004; 168(3): 1563 - 1573. [Abstract] [Full Text] [PDF]
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L. Li, Y. Zhao, B. C. McCaig, B. A. Wingerd, J. Wang, M. E. Whalon, E. Pichersky, and G. A. Howe The Tomato Homolog of CORONATINE-INSENSITIVE1 Is Required for the Maternal Control of Seed Maturation, Jasmonate-Signaled Defense Responses, and Glandular Trichome Development PLANT CELL, January 1, 2004; 16(1): 126 - 143. [Abstract] [Full Text] [PDF]
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C. Li, G. Liu, C. Xu, G. I. Lee, P. Bauer, H.-Q. Ling, M. W. Ganal, and G. A. Howe The Tomato Suppressor of prosystemin-mediated responses2 Gene Encodes a Fatty Acid Desaturase Required for the Biosynthesis of Jasmonic Acid and the Production of a Systemic Wound Signal for Defense Gene Expression PLANT CELL, July 1, 2003; 15(7): 1646 - 1661. [Abstract] [Full Text] [PDF]
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E. Fridman and D. Zamir Functional Divergence of a Syntenic Invertase Gene Family in Tomato, Potato, and Arabidopsis Plant Physiology, February 1, 2003; 131(2): 603 - 609. [Abstract] [Full Text] [PDF]
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Y.-S. Yim, G. L. Davis, N. A. Duru, T. A. Musket, E. W. Linton, J. W. Messing, M. D. McMullen, C. A. Soderlund, M. L. Polacco, J. M. Gardiner, et al. Characterization of Three Maize Bacterial Artificial Chromosome Libraries toward Anchoring of the Physical Map to the Genetic Map Using High-Density Bacterial Artificial Chromosome Filter Hybridization Plant Physiology, December 1, 2002; 130(4): 1686 - 1696. [Abstract] [Full Text] [PDF]
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 S. Moore, J. Vrebalov, P. Payton, and J. Giovannoni Use of genomics tools to isolate key ripening genes and analyse fruit maturation in tomato J. Exp. Bot., October 1, 2002; 53(377): 2023 - 2030. [Abstract] [Full Text] [PDF]
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R. Van der Hoeven, C. Ronning, J. Giovannoni, G. Martin, and S. Tanksley Deductions about the Number, Organization, and Evolution of Genes in the Tomato Genome Based on Analysis of a Large Expressed Sequence Tag Collection and Selective Genomic Sequencing PLANT CELL, July 1, 2002; 14(7): 1441 - 1456. [Abstract] [Full Text] [PDF]
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J. P. Tomkins, G. Davis, D. Main, Y. Yim, N. Duru, T. Musket, J. L. Goicoechea, D. A. Frisch, E. H. Coe Jr., and R. A. Wing Construction and Characterization of a Deep-Coverage Bacterial Artificial Chromosome Library for Maize Crop Sci., May 1, 2002; 42(3): 928 - 933. [Abstract] [Full Text] [PDF]
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N. A. Eckardt Tangerine Dreams: Cloning of Carotenoid Isomerase from Arabidopsis and Tomato PLANT CELL, February 1, 2002; 14(2): 289 - 292. [Full Text] [PDF]
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T. Isaacson, G. Ronen, D. Zamir, and J. Hirschberg Cloning of tangerine from Tomato Reveals a Carotenoid Isomerase Essential for the Production of {beta}-Carotene and Xanthophylls in Plants PLANT CELL, February 1, 2002; 14(2): 333 - 342. [Abstract] [Full Text] [PDF]
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L. Mao, D. Begum, S. A. Goff, and R. A. Wing Sequence and Analysis of the Tomato JOINTLESS Locus Plant Physiology, July 1, 2001; 126(3): 1331 - 1340. [Abstract] [Full Text] [PDF]
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6,
and combining the results from BLASTN, BLASTX, and TBLASTX searches, 24.3% of the BAC end sequences were similar to known sequences, of
which almost half (48.7%) share sequence similarities to
retrotransposons and 7% to known genes. Some of the transposable
element sequences were the first reported in tomato, such as sequences
similar to maize transposon Activator (Ac) ORF and
tobacco pararetrovirus-like sequences. Interestingly, there were no BAC
end sequences similar to the highly repeated TGRI and TGRII elements.
However, the majority (70.3%) of STCs did not share significant
sequence similarities to any sequences in GenBank at either the DNA or
predicted protein levels, indicating that a large portion of the tomato
genome is still unknown. Our data demonstrate that this BAC library is
suitable for developing an STC database to sequence the tomato genome. The advantages of developing an STC framework for whole-genome sequencing of tomato are discussed.